Query= MSMg01no378_l14.b1 MSMg01no378_l14.b1 CHROMAT_FILE:
MSMg01no378_l14.b1 PHD_FILE: MSMg01no378_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:17 2005
(509 letters)
>mm_chr19_30381969_30382877
Length = 909
Score = 953 bits (493), Expect = 0.0
Identities = 502/505 (99%)
Strand = Plus / Minus
Query: 5 gaattcaagacatctctgctacattcagagatcaagtcctgaatcactttgtcctgggga 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattcaagacacctatgctacattcagagatcaagtcctgaatcactttgtcctgggga 470
Query: 65 ttctggggaaaatgtaaggataaggcacaacaaagtgaactgcatccaaggatgggaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttctggggaaaatgtaaggataaggcacaacaaagtgaactgcatccaaggatgggaact 410
Query: 125 tttagtgcaggagggcaggagacaagcaaagggtgtctaattacagctctgagaactggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttagtgcaggagggcaggagacaagcaaagggtgtctaattacagctctgagaactggt 350
Query: 185 cccatcaaaataccaacttcaagtcttgggagtccatgtcatggactgtagaaagtgaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cccatcaaaataccaacttcaagtcttgggagtccatgtcatggactgtagaaagtgaaa 290
Query: 245 acgtatgctcctctcccaggacatacttagctgtaacaacattcattcgtgtctttatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acgtatgctcctctcccaggacatacttagctgtaacaacattcattcgtgtctttatct 230
Query: 305 tgacttgccctactcagtgttggagcattaaccatgaacaactgctaagcacttgatgtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgacttgccctactcagtgttggagcattaaccatgaacaactgctaagcacttgatgtt 170
Query: 365 actggggagctggaaaaccaaggaagtaaattgatttgattcaattttaattactataaa 424
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 169 actggggagctggaaaaccaaggaagtaaattgatttgatccaattttaattactataaa 110
Query: 425 tttaaattttaaaacagtgtgaaaatttttatttattataattatagtgtttcaggaata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tttaaattttaaaacagtgtgaaaatttttatttattataattatagtgtttcaggaata 50
Query: 485 ttacacgtcacttcaatcatgtagt 509
|||||||||||||||||||||||||
Sbjct: 49 ttacacgtcacttcaatcatgtagt 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_l14.g1 MSMg01no378_l14.g1 CHROMAT_FILE:
MSMg01no378_l14.g1 PHD_FILE: MSMg01no378_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:17 2005
(475 letters)
>mm_chr19_30198317_30199191
Length = 875
Score = 801 bits (414), Expect = 0.0
Identities = 461/478 (96%), Gaps = 6/478 (1%)
Strand = Plus / Plus
Query: 1 cacagctcagcagaaaacctagcacggagctggcctacaaaatgaaggggccaggaacag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cacagctcagcagaaaacctagcacggagctggcctccaaaatgaaggggccaggaacag 260
Query: 61 aggcctcctttggccttaaggagaggctttgcatagatcacaacatgtctttctgggaca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aggcctcctttggccttaaggagaggctttgcatagatcacaacacgtctttctgggaca 320
Query: 121 gtggtggtgcccagtagcaccagctacgtagataaggaccccagtggtccccagaggagt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gtggtggtgcccagtagcaccagctacgtagataaggaccccagtggtccccag--gagt 378
Query: 181 cactttt--gcaaacccaactctcatgcccaaagcagagcatgtagcagaaatacatctg 238
||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 cacttttttgcaaacccgactctcatgcccaaagcagagcatgcagcagaaatacatctg 438
Query: 239 ctccccaacctcatggctgcttagtgctaggaacaatctgcttagtgctaggggga-cat 297
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 439 ctccccaacctcatggctgcttagtgctaggaacaatctgcttagtgttagggggaacgt 498
Query: 298 agttattcagtggtatcttacatatggcctagactatgcttaggctcaaaattgcttaat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agttattcagtggtatcttacatatggcctagactatgcttaggctcaaaattgcttaat 558
Query: 358 cttaggcccagggctagggcggagccaataaggagggtgacaatggcagcaatcaggttc 417
||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||
Sbjct: 559 cttaggcccagggctagggcggagctaatgaggagggtggcaatggcagcaataaggttc 618
Query: 418 ctgcctccctctccctagagagcactttcatggcccactgactaactccatatgctgg 475
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 ctgcctccttctccctagagagcactttcatggcccactgacta-ctccatatgctgg 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
