Query= MSMg01no379_h10.b1 MSMg01no379_h10.b1 CHROMAT_FILE:
MSMg01no379_h10.b1 PHD_FILE: MSMg01no379_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:14 2005
(450 letters)
>mm_chr19_35455960_35456809
Length = 850
Score = 864 bits (447), Expect = 0.0
Identities = 447/447 (100%)
Strand = Plus / Plus
Query: 4 ggaattccagttttagctgaggcgtcgaaacaatggcagcattggaatgtttccttatag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagttttagctgaggcgtcgaaacaatggcagcattggaatgtttccttatag 263
Query: 64 tgtcttgagtaggaaatttaggttcaagaacacctctcactcagtctttatagaggtcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcttgagtaggaaatttaggttcaagaacacctctcactcagtctttatagaggtcaa 323
Query: 124 aatgagagctggataagaagagctatccaaatttatgatatatgactcaaaggtgaacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgagagctggataagaagagctatccaaatttatgatatatgactcaaaggtgaacag 383
Query: 184 tgtcctatataaggaactttatgctaatgactttaaagcatttggatctcataaaaacaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtcctatataaggaactttatgctaatgactttaaagcatttggatctcataaaaacaa 443
Query: 244 taagttatacagccagtattgctgtttagagttttagtctcctctaaaagtgcttgaaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taagttatacagccagtattgctgtttagagttttagtctcctctaaaagtgcttgaaag 503
Query: 304 gtcagttctatgcatggataacacatcaagaacaaaaagtttctgtccttgaatgtactt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtcagttctatgcatggataacacatcaagaacaaaaagtttctgtccttgaatgtactt 563
Query: 364 ataaatctttagtatacatttagcttcctaaacaccaaagtgtcctgcatatgattcagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataaatctttagtatacatttagcttcctaaacaccaaagtgtcctgcatatgattcagg 623
Query: 424 ctagtggcactctttcttttttaaatg 450
|||||||||||||||||||||||||||
Sbjct: 624 ctagtggcactctttcttttttaaatg 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_h10.g1 MSMg01no379_h10.g1 CHROMAT_FILE:
MSMg01no379_h10.g1 PHD_FILE: MSMg01no379_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:14 2005
(317 letters)
>mm_chr19_35656161_35656877
Length = 717
Score = 507 bits (262), Expect = e-148
Identities = 294/315 (93%), Gaps = 16/315 (5%)
Strand = Plus / Minus
Query: 1 cgtttctctttgttaaaagcctttcaaaaatattaagtctgtgcatattggtgtatttaa 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cgtttctctttgttaaaatcctttcaaaaatattaagtctgtgcatattggtgtatttaa 371
Query: 61 gagtgaggcatattcacacggagagcagatgtgatgtttactgctgaacatctgcaggca 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gagtgaggaatattcacacggagagcagatgtgatgtttactgctgaacatctgcaggca 311
Query: 121 tttgaaactgttaagcatcactatggaagtattagtgaggctctagccatgttcagattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 310 tttgaaactgttaagcatcactatggaagtattagtgaggctctagccatgctcagattt 251
Query: 181 aactttctctgctcaacaactcaagtgtttctgccctctaataatttgtcatttatttat 240
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 250 aactttctctgctcaacaactaaagtgtttctgccctctaataatttgtc---------- 201
Query: 241 ttatttatttatttatttatttatttatttatttatttatttatttaacatgtggntgca 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 200 ------atttatttatttatttatttatttatttatttatttatttaacatgtgggtgca 147
Query: 301 ctgttgctgccttca 315
|||||||||||||||
Sbjct: 146 ctgttgctgccttca 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
