BAC Information

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BAC

Clone NameMSMg01-379I01
Chromosome19 (Build37)
Map Location 46,925,653 - 47,105,946
singlet/doubletdoublet
Overlap geneCnnm2, Nt5c2, Ina
Upstream gene9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt
Downstream genePcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379I01.T7 (MSMg01no379_i01.b1)MSMg01-379I01.TJ (MSMg01no379_i01.g1)
ACCAG484100AG484101
length743725
length of high quality
(start - end)
221 (35 - 255)420 (76 - 495)
definitionCHROMAT_FILE: MSMg01no379_i01.b1 PHD_FILE: MSMg01no379_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:17 2005CHROMAT_FILE: MSMg01no379_i01.g1 PHD_FILE: MSMg01no379_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,105,800 - 47,105,946)(46,925,653 - 46,926,072)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCG
GAATTCCTTATATTGCGTATGAGTCCTTTTGTCCAGAAGTCAAAAGATGG
GCAGCCCACCTCTTCCTTGATTTACATAGCAGAGGTAAATTTGGTTTTTT
TCTAAGATTTATTTTATATCTATATCTATCTATCTATCTATGTACACACA
CACACACACACACACACACACAAATACACAAACACACACTCATTGTCTTC
AGACACACCAGAAGAGGGCGTTAGATCTCATTACAGATGGTTGCGAGCCA
CTATGTAGTTGCTGGGATTTTTACTCATGACCTTTGGATAAGTAGTTGGT
GCTCTTAATCGCCGGGTCATCTCTCTAAGTTCGGTAAATTTGCCTTAATC
TGCACTACTGGCGGTTTAGCCTGCGATCCTAGTTACTTGGTCTCCTGATG
CCTATCACCCTCCACAACTCACACGCTGAGGGTCATCCTGGTCATCTTAT
GTCTTATCCTGATGTGGCGTCTTAGCTCCACAATTCCTTCCTGTTGGGAG
GCGAGGTTTATATTTTGAGGCTATTTCTGGTTTATACCTTCTTCTGTTTA
GTCCATGTTTGACCTTTTGTTTTTCCCTTTTGTCTAAGACTATTTATCGT
TCTTATGTTTCTTTCTTTTTTGCGTCATTCGTCCTATTCTTGCCTTTACT
TTTTATACCTTGCAGTCAGCCTTTCTTAACTATCCCTTTTCTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGCATTCTTTCTACCTGTCTCCG
CCCTTACCCATCTGCTAATGTCTCTTTGGAAAAGCCTGTTGTGGGGCTGA
AACGAAGATGGCTCCATAGGTAAGTGCTCAGAGTGCTCTTCGGGGGGCTC
TAGTTCAGTTGCCAGCCCCCTTGTTGGGCTGCACAAACAGCCTATGACTC
TAGCTCTAGTGGTTCTGGCGCGCTCTTTTGGCTTCCGCAGGCACCTGCAC
TCTCATGCACAGATGCACATACAAACACACTCACGTACATACATACACAT
CATTTAAAATAAAAAATATTTTTTTAAAAAGTCCCTTGTTCCATCTAGTA
CTTGGAACTATTTATTCATGTGTTCATCTCAAGTTATTGTCACTAGTCAC
TTGAAATATTAGCAGGACTGGAGAAATGGTTTAGCAGTTGAGGACCCTGG
CTGCTCTTCCATGGGACCAGCTTGGGTTCAAGCCCCATCACCCACATTGG
TGACCTACAGCTTCAGTCCCAGGGGATCCAGCACCCTCTTCTGATCTCCA
TGCGTACACCACGCACATATTTGGTACTGATATAACCGTTGGCCCACGCT
CCTCTGTATANTTACCAATCTTTATTGGCACTGGTTCCCCCTTTTTTTGC
CAATTTTTTCAATAGTTGTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_i01.b1 MSMg01no379_i01.b1 CHROMAT_FILE:
MSMg01no379_i01.b1 PHD_FILE: MSMg01no379_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:17 2005
         (221 letters)



>mm_chr19_47105588_47106208
          Length = 621

 Score =  269 bits (139), Expect = 1e-76
 Identities = 145/147 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattccttatattgcgtatgagtccttttgtccagaagtcaaaagatgggcagcccac 75
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggaattccttatatcgtgtatgagtccttttgtccagaagtcaaaagatgggcagcccac 300

                                                                       
Query: 76  ctcttccttgatttacatagcagaggtaaatttggtttttttctaagatttattttatat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctcttccttgatttacatagcagaggtaaatttggtttttttctaagatttattttatat 240

                                      
Query: 136 ctatatctatctatctatctatgtaca 162
           |||||||||||||||||||||||||||
Sbjct: 239 ctatatctatctatctatctatgtaca 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no379_i01.g1 MSMg01no379_i01.g1 CHROMAT_FILE:
MSMg01no379_i01.g1 PHD_FILE: MSMg01no379_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:17 2005
         (420 letters)



>mm_chr19_46925453_46926272
          Length = 820

 Score =  781 bits (404), Expect = 0.0
 Identities = 416/420 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcattctttctacctgtctccgcccttacccatctgctaatgtctctttggaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggcattctttctacctgtctccgcccttacccatctgctaatgtctctttggaaaagc 260

                                                                       
Query: 61  ctgttgtggggctgaaacgaagatggctccataggtaagtgctcagagtgctcttcgggg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcgtggggctgaaacgaagatggctccataggtaagtgctcagagtgctcttcgggg 320

                                                                       
Query: 121 ggctctagttcagttgccagcccccttgttgggctgcacaaacagcctatgactctagct 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactctagttcagttgccagcccccttgttgggctgcacaaacagcctatgactctagct 380

                                                                       
Query: 181 ctagtggttctggcgcgctcttttggcttccgcaggcacctgcactctcatgcacagatg 240
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ctagtggttctggcacgctcttttggcttccgcaggcacctgtactctcatgcacagatg 440

                                                                       
Query: 241 cacatacaaacacactcacgtacatacatacacatcatttaaaataaaaaatattttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacatacaaacacactcacgtacatacatacacatcatttaaaataaaaaatattttttt 500

                                                                       
Query: 301 aaaaagtcccttgttccatctagtacttggaactatttattcatgtgttcatctcaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaagtcccttgttccatctagtacttggaactatttattcatgtgttcatctcaagtt 560

                                                                       
Query: 361 attgtcactagtcacttgaaatattagcaggactggagaaatggtttagcagttgaggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgtcactagtcacttgaaatattagcaggactggagaaatggtttagcagttgaggac 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)