TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATGTTAATAAATCTTCCATTGTGTTATCCAGGGTCGTGATCAAATA
AACTGGTTTCTTGTTTTCATCTAAAAATAATTTAACAATTATTTCTTGGT
GGGAAAATTAACTGAAGATAAATTAGTAATTATGATTGAAAATTATTTCC
CTAGCTTCTCCTCAATAAGGTCCCTTTCTTTGTTTTTTAAACTCAAAAAA
ATTTCATTCTCCATACAATGTACTTTAACACTAGTCTTAAGCCTGTAACA
AAAACAAGCAAGCTGTTAAAGAACCAACCTAATTTTTAGGGCATGAAGAA
TTCTAGTATTGAGTCATAACTATGCCTTGAAAGAAAACAGTGTGTATCAC
TGAAAACACTAGTTGTTGAGATGGAATATTATTTTCTATATACCAGATAG
AAATCATTCTTAGCACTATAAAATAATTACTAGTTATATTATTGATCCAG
TTCAAAACTAAAGATCCTATGAGAACTACTAGGGAAGAGATATCTGCATA
GCATTTAAAACGTCATTATCCAATTACTTAGGGCTGTTGAAAATCAGCAT
CTCGAGACTTAAAGAACCACAAACTAATTACCATGGTCTTGCAGAGAAAA
TGTGCATACAGCCCTTCAACCTAAAAAGTTTAAGAGTAATATGAACCAGT
TTTCCATTTTTATGGACTACTCCCTAACGGTTTTCTATTCCTAAAAAAGA
GCCACCCTTT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTTCTTCTCGAATTTAGGAATTGTCTCAG
GATTTCTTAGTTAGGATGTGATAAAACTCCAGGACCAAAAGCAACTTGGG
AAAGAAAGGATTTATTTCAGTTTACAATTTATAGTTCATCGTCGAGAGAA
ATCAGAGCAGGAACTCAAGGCAGGAACTCAAGCAGAAGTCATGAAGGAAG
GCTGGTTCCTGGCTCTTTCCCATGGCTTGCTGAGTCTGCTTTCAGACGCT
ACCCTGTACTGTGTGGCAAGGGCAGCAGGAGCCAGAGTGACTGCACATGG
CACCCACAGCCTGGAGGCAGAGAGTTATGGATGCTCATATTCAGGTAATC
AAGGTGCTTTCTCCTTTTGGTTGGATTCAAGGTCCCAGTTCAGGGAAAAG
TGACCCACATTTAGGGTGGGATTTCCCACCTAGTTAATCTAATCTGGAAA
ATGACAGACACACCCAGAGGCGGGTCTCTTTGATGTTGTGGATCCTGACA
TGTAAACATTATTAACAATCCTAAGTGACAGGTGTGGGGTGAGGGGACAG
AACTCTGATGCCGACTATGCTATGCCTTTGACAGCCCTTGGTCCCTCCTT
GATGACTGATGCGGCAAGGACCCCTGCGCATTAATATGTTCAAAAGAATG
GTCCCCCATTCCCCTGAACTTTCGTTCCTTTTCCCCGTCACCCTCTTCTC
C

Query= MSMg01no379_l01.b1 MSMg01no379_l01.b1 CHROMAT_FILE:
MSMg01no379_l01.b1 PHD_FILE: MSMg01no379_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:31 2005
         (553 letters)



>mm_chr19_16781619_16782571
          Length = 953

 Score = 1054 bits (545), Expect = 0.0
 Identities = 548/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatgttaataaatcttccattgtgttatccagggtcgtgatcaaataaactgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatgttaataaatcttccattgtgttatccagggtcgtgatcaaataaactgg 264

                                                                       
Query: 65  tttcttgttttcatctaaaaataatttaacaattatttcttggtgggaaaattaactgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcttgttttcatctaaaaataatttaacaattatttcttggtgggaaaattaactgaa 324

                                                                       
Query: 125 gataaattagtaattatgattgaaaattatttccctagcttctcctcaataaggtccctt 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gataaattagtaattatcattgaaaattatttccctagcttctcctcaataaggtccctt 384

                                                                       
Query: 185 tctttgttttttaaactcaaaaaaatttcattctccatacaatgtactttaacactagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctttgttttttaaactcaaaaaaatttcattctccatacaatgtactttaacactagtc 444

                                                                       
Query: 245 ttaagcctgtaacaaaaacaagcaagctgttaaagaaccaacctaatttttagggcatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaagcctgtaacaaaaacaagcaagctgttaaagaaccaacctaatttttagggcatga 504

                                                                       
Query: 305 agaattctagtattgagtcataactatgccttgaaagaaaacagtgtgtatcactgaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaattctagtattgagtcataactatgccttgaaagaaaacagtgtgtatcactgaaaa 564

                                                                       
Query: 365 cactagttgttgagatggaatattattttctatataccagatagaaatcattcttagcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactagttgttgagatggaatattattttctatataccagatagaaatcattcttagcac 624

                                                                       
Query: 425 tataaaataattactagttatattattgatccagttcaaaactaaagatcctatgagaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tataaaataattactagttatattattgatccagttcaaaactaaagatcctatgagaac 684

                                                                       
Query: 485 tactagggaagagatatctgcatagcatttaaaacgtcattatccaattacttagggctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tactagggaagagatatctgcatagcatttaaaacgtcattatccaattacttagggctg 744

                    
Query: 545 ttgaaaatc 553
           |||||||||
Sbjct: 745 ttgaaaatc 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)