Query= MSMg01no379_n05.b1 MSMg01no379_n05.b1 CHROMAT_FILE:
MSMg01no379_n05.b1 PHD_FILE: MSMg01no379_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:41 2005
(533 letters)
>mm_chr19_18519016_18519948
Length = 933
Score = 1002 bits (518), Expect = 0.0
Identities = 527/530 (99%), Gaps = 1/530 (0%)
Strand = Plus / Plus
Query: 5 gaattctttctttc-tacattgcttttggtcacggtgtattgtcacagcaagggaaaagc 63
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 gaattctttcttccatacattgcttttggtcatggtgtattgtcacagcaagggaaaagc 263
Query: 64 aataagaactcccagctatcagggaacaagcacttagtttgtgcccagtgacacatgggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aataagaactcccagctatcagggaacaagcacttagtttgtgcccagtgacacatgggg 323
Query: 124 ggagtattgccttactcacctccctctaacagaagaaactgaagctatcaacgctgaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagtattgccttactcacctccctctaacagaagaaactgaagctatcaacgctgaaca 383
Query: 184 acttcttcctcaatgagctacaggacaaaattacaatgtcagctttgatctgaccaacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acttcttcctcaatgagctacaggacaaaattacaatgtcagctttgatctgaccaacca 443
Query: 244 tgccaccaatattcttatttactgcaaacattttcaaataatttcccattcaacagcaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgccaccaatattcttatttactgcaaacattttcaaataatttcccattcaacagcaaa 503
Query: 304 gagaaacagtacccggtggcgacagcatagggttgcaaagacgctgaattcgtttgatcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagaaacagtacccggtggcgacagcatagggttgcaaagacgctgaattcgtttgatcc 563
Query: 364 agcaatcatgctcccattggatggaacctgatggttcttcctggatgacctgacaaccat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcaatcatgctcccattggatggaacctgatggttcttcctggatgacctgacaaccat 623
Query: 424 gcaacagaatgaaagagctagtgagagctcgacatcttgacaatctggctaagagcacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaacagaatgaaagagctagtgagagctcgacatcttgacaatctggctaagagcacat 683
Query: 484 tttcaactgagcgctcctccctctgcagacttttgagccattgacacaca 533
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttcaactgagcgctcctccctctgcagacttttgagccattgacacaca 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_n05.g1 MSMg01no379_n05.g1 CHROMAT_FILE:
MSMg01no379_n05.g1 PHD_FILE: MSMg01no379_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:41 2005
(392 letters)
>mm_chr19_18672286_18673076
Length = 791
Score = 712 bits (368), Expect = 0.0
Identities = 386/392 (98%), Gaps = 1/392 (0%)
Strand = Plus / Minus
Query: 1 ttacagttgccgtgatgaacaactactttctttaccaggttgcaaagcatttcatcaccc 60
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 706 ttacagttgccgtgatgaacaactattttctttatcaggttgcaaagcatttcatcaccc 647
Query: 61 cagagtaaaaccttgtgcccagagactggccatgtctcattctccactcatcccacagag 120
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 646 cagagtaaaaccttgtgcccagagactggccatgtctcattccccattcatcccacagag 587
Query: 121 gagtgatcagagatttgatatctgtgcatatgtatacacggacgcttgggatgtgtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gagtgatcagagatttgatatctgtgcatatgtatacacggacgcttgggatgtgtttta 527
Query: 181 ggctgtttatttggtggggatttttttttttcatgtgttcttgtttagttcatgagtgga 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggctgtttatttggtgggga-ttttttttttcatgtgttcttgtttagttcatgagtgga 468
Query: 241 aatttaggcagacctgacatttgaaggaaactaaagggacaggaaaaggtagctccttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aatttaggcagacctgacatttgaaggaaactaaagggacaggaaaaggtagctccttgg 408
Query: 301 tttctctgaaagcgctgactggagagggctcaccgtgagctgtgagtggacaggtaccga 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 407 tttctctgaaagcgctgactggagagggctcactgtgagctgtgagtggacaggtaccga 348
Query: 361 acaggaatggtcttgggacatctctaatgtga 392
||||||||||||||||||||||||||||||||
Sbjct: 347 acaggaatggtcttgggacatctctaatgtga 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space: 299506
Effective search space used: 299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
