Query= MSMg01no379_p09.b1 MSMg01no379_p09.b1 CHROMAT_FILE:
MSMg01no379_p09.b1 PHD_FILE: MSMg01no379_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:52 2005
(387 letters)
>mm_chr19_34021961_34022747
Length = 787
Score = 698 bits (361), Expect = 0.0
Identities = 376/387 (97%), Gaps = 10/387 (2%)
Strand = Plus / Plus
Query: 1 ccaaaattaggttacttttccttggtgatttcatctaatcacaaggttagttacatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ccaaaattaggttacttttccttggtgatttcatctaatcacaaggttagttacatatat 270
Query: 61 atatatatatatatatatatcacaaacatacattcacttttttctatgttggcatttttc 120
|||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 271 atatatatat----------cacaaacatacattcatttttttctatgttggcatttttc 320
Query: 121 ttgaattccagattcccaggaacaaccacctgcttcatgtttttgtttatgtatcccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaattccagattcccaggaacaaccacctgcttcatgtttttgtttatgtatcccctt 380
Query: 181 cggcaagaatagattccttgggttccaaacatcaatggtgcctgtctcaatgtttcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggcaagaatagattccttgggttccaaacatcaatggtgcctgtctcaatgtttcagaa 440
Query: 241 tcaaggaacaatttgtgcaagtctaaataaggccctttgaaagtttatgaattgttttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaggaacaatttgtgcaagtctaaataaggccctttgaaagtttatgaattgttttct 500
Query: 301 aaggcaagttacatttgctctcttacagatacagatattttaaaaggttattcaggattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggcaagttacatttgctctcttacagatacagatattttaaaaggttattcaggattt 560
Query: 361 ataatggtaataataactctaagttga 387
|||||||||||||||||||||||||||
Sbjct: 561 ataatggtaataataactctaagttga 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_p09.g1 MSMg01no379_p09.g1 CHROMAT_FILE:
MSMg01no379_p09.g1 PHD_FILE: MSMg01no379_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:52 2005
(168 letters)
>mm_chr19_39512502_39513069
Length = 568
Score = 294 bits (152), Expect = 2e-84
Identities = 164/168 (97%)
Strand = Plus / Plus
Query: 1 acctgcaaccatggggagctcagaatcttgacattctcatttagttttttcatgagcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgcaaccatggggagctcagaatcttgacattctcatttagttttttcatgagcata 260
Query: 61 agaaaatctttatccttgtaatgaaaacgatcttgaaaaatgatggagcagatgacattg 120
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct: 261 agaaaatctttatccttgtaatcaaaacgatcttgaaaaataattgagcagatgacattg 320
Query: 121 catggagcacagctcagaatgaatgtgggttcacaaggtgagcctgaa 168
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 catggagcacagctcagaatgaatgtggggtcacaaggtgagcctgaa 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space: 89600
Effective search space used: 89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
