BAC Information

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BAC

Clone NameMSMg01-379P23
Chromosome19 (Build37)
Map Location 59,224,800 - 59,225,203
singlet/doubletsinglet
Overlap genenone
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626
Downstream geneVax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379P23.T7 (MSMg01no379_p23.b1)MSMg01-379P23.TJ (MSMg01no379_p23.g1)
ACCAG484477AG484478
length783761
length of high quality
(start - end)		472 (41 - 512)404 (70 - 473)
definitionCHROMAT_FILE: MSMg01no379_p23.b1 PHD_FILE: MSMg01no379_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:55 2005CHROMAT_FILE: MSMg01no379_p23.g1 PHD_FILE: MSMg01no379_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATTAACATTTCTGACTTTTAAAATCTTTTAAAATTGTATTTACTTTCAT
TTATGTGTTTGAGTGTTTGCCTGCATATATGTGTGTATGTGTATTATAGG
CATGCCTGGTGCCCAGAGGAACCAGAAAAGGGCATTGGATCTCCTGAAAT
TGGAGTTATAGGTGGCTGTGAGCCCCAACCATAAAAATGATTTTCATTGC
CAATTCATAACTATAATTTTGGCACTATTATGAGTCATCTCTGTGTTGTC
CAGTGGTCTTGGGTGACCCCTGTGAAAGGGTCATGAGACCCCTTTAGGGT
TCTTGACAAGAGCAGCTTTTTTTCTTAACTGCTGAACTGTGTCTTCGGCC
CTCTTGTTTGACAACGTTTCATGAAACTCAGACATTCTAACAGTGCAACC
CAAAGACACACTGATTCAATATTTACCCGATGGGGAAGATAGTAAATGTT
TATATTTTGTAGAATTAAACCATGATATTTCAACACGATCAAAAAGTTTG
TACATATTATAAAATACTACCATGTGTAATGGGCAGAAATGTTAAATCTG
ATGCGTTTCACGCTGCGTTTTTTGGTGATCTGTACCACGATATTTTGCTG
CATTTGCTAAATCGCCTTAACGTTTTTCAACTTCACCCACACCTCTGGTG
CAAATATTCCTTTTCCCGTTTTTTTTTTGAACTTCCCCCTCCTTTCCCAC
ACCTTTTCTTTTTCCTTTACACACCATGACTCC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTAAAGGGAATTGCCAACGATCAAAACTGG
TTGATAAATCATGAGTGTAGCTATGTAATTAAACATTCCTCCTCAGAGCC
CTGTAATTAAGTTCGTTGTCTACTTACTCATAATGAACCATTCCTCCTAA
TATGCTAAGTACAGAAGGGAGTCAGGGAGAAAAATTTTAATTTGGAGTTT
TCTGTGAGTTGGATCAAGAGGTGGTAGAGTCTAGGCTGGGCATCTGCAGA
TCCCAGTAAGAGTTAGTGCTGAAACTGAGCTGCTCACAAACTTTGGGGCT
TTTGCCGAATACCCATGCTTAACTGAACCATTGTGTTGGGCAACAGGGTG
CTGTCTCTTAAGAGTCTGTTCTGAAGCTGTGGTGAAAGCCGGGGTGTGAT
AGCATTTTGCAAATCTTAAACAGGTGCCAAGCCTCCATCGTCACCCGTGG
GACTCTCAGCTTTCTGTTGCAGGTCCAGTGCTCTGTTGTCAGGAGGAGGA
AAAACTTTAGGAATCAATATCCGCTTCTGTGGATCCCGATTAAAGCTTTT
AAGTATCCAAAATGTGGTGGACCAACCGGGTATTTTTTGAACCGGCCTTT
TTACCGTTCTTAAACACTGCCCTTGTTTCTGGGTACTTTTTATTTTACCT
CCCTTTCCTTCCCCTTCTCCTCCCTTTTCTTATCTCCCTTTCCTCCCCTA
CCCTTTCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_p23.g1 MSMg01no379_p23.g1 CHROMAT_FILE:
MSMg01no379_p23.g1 PHD_FILE: MSMg01no379_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:55 2005
         (404 letters)



>mm_chr19_59224600_59225403
          Length = 804

 Score =  774 bits (400), Expect = 0.0
 Identities = 403/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaagggaattgccaacgatcaaaactggttgataaatcatgagtgtagctatgtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tttaaagggaattgccaacgatcaaaactggttgataaatcatgagtgtagctatgtaat 545

                                                                       
Query: 61  taaacattcctcctcagagccctgtaattaagttcgttgtctacttactcataatgaacc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 544 taaacattcctcctcagagccctgtaattaagttcgtcgtctacttactcataatgaacc 485

                                                                       
Query: 121 attcctcctaatatgctaagtacagaagggagtcagggagaaaaattttaatttggagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attcctcctaatatgctaagtacagaagggagtcagggagaaaaattttaatttggagtt 425

                                                                       
Query: 181 ttctgtgagttggatcaagaggtggtagagtctaggctgggcatctgcagatcccagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttctgtgagttggatcaagaggtggtagagtctaggctgggcatctgcagatcccagtaa 365

                                                                       
Query: 241 gagttagtgctgaaactgagctgctcacaaactttggggcttttgccgaatacccatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gagttagtgctgaaactgagctgctcacaaactttggggcttttgccgaatacccatgct 305

                                                                       
Query: 301 taactgaaccattgtgttgggcaacagggtgctgtctcttaagagtctgttctgaagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 taactgaaccattgtgttgggcaacagggtgctgtctcttaagagtctgttctgaagctg 245

                                                       
Query: 361 tggtgaaagccggggtgtgatagcattttgcaaatcttaaacag 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tggtgaaagccggggtgtgatagcattttgcaaatcttaaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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