Query= MSMg01no380_g19.b1 MSMg01no380_g19.b1 CHROMAT_FILE:
MSMg01no380_g19.b1 PHD_FILE: MSMg01no380_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:30 2005
(648 letters)
>mm_chr19_28143517_28144564
Length = 1048
Score = 1133 bits (586), Expect = 0.0
Identities = 628/646 (97%), Gaps = 9/646 (1%)
Strand = Plus / Plus
Query: 4 ggaattctttatatatactgcatacaattctttgttagaagatgcagcatttcgcattat 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttatatatactgcaaacaattctttgttagaagatgcagcatttcgcattat 263
Query: 64 ttttactttcttgtatttattcatttttgacgtgcgagggagacacatgtattttgggcc 123
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 264 ttttactttcttgtatttattcatttttggcgtgcgagggagacacgtgtattttgggcc 323
Query: 124 tgctctctactactgagccacatgcctgcctcattttcccctgctcctctctctttggga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctctctactactgagccacatgcctgcctcattttcccctgctcctctctctttggga 383
Query: 184 tatgctcttgctctgttcttcaggctcagacaatcctcctgcctcagtctcccgagtagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgctcttgctctgttcttcaggctcagacaatcctcctgcctcagtctcccgagtagc 443
Query: 244 taggacaactgttatgtgctactgtgccaggcaactgtggaatctattggtggcgattct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taggacaactgttatgtgctactgtgccaggcaactgtggaatctattggtggcgattct 503
Query: 304 tttattgttgaagaacagggactatttcaattaagctcaactgatcaagtcttgttttac 363
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 504 tttattgttgaagaacagggactatttcgattaagctcaactgatcgagtctcgttttac 563
Query: 364 ctggtagataatagttttctgtcttctggaaggatcacttgcctctcctaaagttgaaat 423
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 ctggtag-------ttttctgtcttctggaaggatcacttgcctctcctgaagttgaaat 616
Query: 424 gactttttgtagtt-accaggtcagtgtagaatgtaatttgaactttttagtgtagtgtg 482
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gactttttgtagtttac-aggtcagtgtagaatgtaatttgaactttttagtgtagtgtg 675
Query: 483 aaatactacacaaagtaggggttactttccccctatagagacctagttatttcagttttg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaatactacacaaagtaggggttactttccccctatagagacctagttatttcagttttg 735
Query: 543 tttgttggagactattcttctttcattgaatatttttggcagcacttaagatagtaacac 602
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 736 tttgttggagactattcttctttcattgaatatttttggcagcacttaggaaagtaacac 795
Query: 603 agttgtaaagtatgaacctatctttgggctctattctattatacac 648
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agttgtaaagtatgaacctatctttgggctctattctattatacac 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_g19.g1 MSMg01no380_g19.g1 CHROMAT_FILE:
MSMg01no380_g19.g1 PHD_FILE: MSMg01no380_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:30 2005
(452 letters)
>mm_chr19_28335525_28336376
Length = 852
Score = 692 bits (358), Expect = 0.0
Identities = 391/416 (93%), Gaps = 22/416 (5%)
Strand = Plus / Minus
Query: 1 ttcatgaaactgggctcagtatctctttcaatgaggcagttaaacagctcaatgtcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttcatgaaactgggctcagtatctctttcaatgaggcagttaaacagctcaatgtcagat 335
Query: 61 gtgggtcctgagactgtatcctcataggcaggcctgtgagcctggccccacattagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtgggtcctgagactgtatcctcataggcaggcctgtgagcctggccccacattagaaga 275
Query: 121 gttccaccgcgtgtcttgcttccttccaagatggcactgcatactgaatgggaagatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gttccaccgcgtgtcttgcttccttccaagatggcactgcatactgaatgggaagatgaa 215
Query: 181 gaaccaagtgtgggctctttctctctctctctctctctctctctctctctctctctctct 240
|||||||||||||| | ||||||||||||||||||||||
Sbjct: 214 gaaccaagtgtggg----------------------cgctctctctctctctctctctct 177
Query: 241 ctctctctctctctctctctcccttcccctcccctcactctctaacagcacattggttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ctctctctctctctctctctcccttcccctcccctcactctctaacagcacattggttgg 117
Query: 301 tccagtgttgccaaagaggccatattcttggggggaaaactatcttgcaagcttctaagt 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tcaagtgttgccaaagaggccatattcttggggggaaaactatcttgcaagcttctaagt 57
Query: 361 cccaagacttccaattctctttgttattctgagctttaaggaaggaaccctgtctg 416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 56 cccaagacttccaattccctttgttattctgagctttaaggaaggaaccctgtctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
