Query= MSMg01no380_o23.b1 MSMg01no380_o23.b1 CHROMAT_FILE:
MSMg01no380_o23.b1 PHD_FILE: MSMg01no380_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:09 2005
(498 letters)
>mm_chr19_16457263_16458160
Length = 898
Score = 880 bits (455), Expect = 0.0
Identities = 461/463 (99%)
Strand = Plus / Minus
Query: 7 gaattctcgagcttcctgggcatctctctggggtcctgtttgcaagagaggggagatgca 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaattctcgagctgcctgggcatctctctggggtcctgtttgcaagagaggggagatgca 407
Query: 67 aagtgttatgtgatccacatttgcttatctgctcagtcagcatgtattcagtcctgacct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagtgttatgtgatccacatttgcttatctgctcagtcagcatgtattcagtcctgacct 347
Query: 127 atggggactaatctgtattccagagctatgctaaattcactgtgtgatgatatgcactag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atggggactaatctgtattccagagctatgctaaattcactgtgtgatgatatgcactag 287
Query: 187 tttgcattgccttatgcttgcacggttgtttctcgttgtcccatcatagttttatttgaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tttgcattgccttatgcttgcacggttgtttctcgttgtcccatcatagttttatttgaa 227
Query: 247 taaatttgtcactgttgcttttatatgtcaagttgccacaatctggaatcacctgagagt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 taaatttgtcactgttgcttttatatgtcaagttgccacaatctggaatcacctgagagt 167
Query: 307 gaagtctcagttgagggattacctaaatcaggttattccatggggatgtctctggaggat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaagtctcagttgagggattacctaaatcaggttattccatggggatgtctctggaggat 107
Query: 367 tggttaactggtagaaggggacccaatctgttgtaggcaggggtcctaaaccacacacag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tggttaactggtagaaggggacccaatctgttgtaggcaggggtcctaaaccacacacag 47
Query: 427 aacaggagaaagcgacctctctgcgcttgcccatggatgccac 469
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 46 aacaggagaaagcgtcctctctgcgcttgcccatggatgccac 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_o23.g1 MSMg01no380_o23.g1 CHROMAT_FILE:
MSMg01no380_o23.g1 PHD_FILE: MSMg01no380_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:09 2005
(480 letters)
>mm_chr19_16269047_16269925
Length = 879
Score = 890 bits (460), Expect = 0.0
Identities = 475/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 1 tctagactatttggcctgtggcttaactaaatacagttgaaagaaagaataaaatctaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagactatttggcctgtggcttaactaaatacagttgaaagaaagaataaaatctaaa 260
Query: 61 gaagatggaaatggaacccacttctgtcttggtgatgaaggtggtaaggatgttctaaac 120
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gaaggtggaaatggaacctacttctgtcttgatgatgaaggtggtaaggatgttctaaac 320
Query: 121 acgttaaaccttttttctagaagaaagcatgttttatgccattgaggcacatggggcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgttaaaccttttttctagaagaaagcatgttttatgccattgaggcacatggggcata 380
Query: 181 agacatttgtaatacacttttctaatttaatagtaataaggaagatacagttatgacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacatttgtaatacacttttctaatttaatagtaataaggaagatacagttatgacact 440
Query: 241 aaaggaactataacaatttaataaattgcttctttaaacattaagtatgtgttgggaaca 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggaac-agaacaatttaataaattgcttctttaaacattaagtatgtgttgggaaca 499
Query: 301 gtaattctaagaagccagctgggtgtctgtccattcgtccagaggtgcagcagctaggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaattctaagaagccagctgggtgtctgtccattcgtccagaggtgcagcagctaggct 559
Query: 361 gccttgtgccaaggttgctattgtcacttggttcagtcttgctgccagccagctgtattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gccttgtgccaaggttgctattgtcacttggttcagtcttgctgccagccagctgtattt 619
Query: 421 gatttacttccttagttttcatagccacaacatttattatccgttcaaacactggcagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatttacttccttagttttcatagccacaacatttattatccgttcaaacactggcagat 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space: 408430
Effective search space used: 408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
