BAC Information

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BAC

Clone NameMSMg01-382P08
Chromosome19 (Build37)
Map Location 32,642,215 - 32,642,535
singlet/doubletsinglet
Overlap genenone
Upstream genePrkg1, 1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1
Downstream genePapss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382P08.T7 (MSMg01no382_p08.b1)MSMg01-382P08.TJ (MSMg01no382_p08.g1)
ACCAG486739AG486740
length730796
length of high quality
(start - end)
306 (96 - 401)321 (68 - 388)
definitionCHROMAT_FILE: MSMg01no382_p08.b1 PHD_FILE: MSMg01no382_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:51 2005CHROMAT_FILE: MSMg01no382_p08.g1 PHD_FILE: MSMg01no382_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
TCTTTTGTGAATATCCGTCACAAACATCTGTTTAGCAGAGCTCCACAACA
CTCCCTTGATTTCCATGGCTTTTGTAAAACTTTTCAATTCAGAAGTCTTA
ATGCCTCTAGCTTATTCTTCTTGCTCTAAAAACTACTCTAGCTTTTCAAG
TTTCTTTTTGATCCCATATTAATTTTAAGACTGTTTCTCTATTTATGTGA
AAGTAAGATGTCATTGGATTAATACTAACATTGCATGGAATCTTAAATTG
CTTTGAGTACCATGGTCATTTTAACAGTGCAATCAATGAGCACAGCAAGT
CTTTCTAGTCTTGTATGTCTGTGGCAAAACATTCCTCCCTCCCTCCCTCC
CTCCATACCGAGGTACTACAAAATATAATTATGATATAATGTGCGAGAAA
ACAATCTATTTTCAATAAAGGGAACAAATGGGAATGGACTATAGATCTCA
CGAAAAACAGGTCGCTTTTACTTATTATCATGATCAGTTTCACGAATATT
TTCATATCATCCCCACCGTTTTCTTTACCATTTTCAAAACACTTAATATT
GTTAAAATTATTTGGAAACGACAAAAGCTTAACCAGGTAATAATGCAACC
TTCATAATCAACATACCCGTGCTAGGGGCCAATATTGCCCTCTATTATGT
AAATCTTGATTACGATTATATAATATCAAT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTTTGCTCTGACTGAGGTAGTTTAAGAACAC
TGTCCACTGTAATTTGGACATGTTGTGGGTAGTTGGTATGAGTGAGGTTG
AAACCAGGTACTCACCAGGTACCACCACAAACAATCCAACCCCAGTACAT
TCCCTAGGTTGTTCAAGAATCTATGCTGTCCCTAACTGAGGCTATAGTCA
GAAGTGAGCTTCTTGGAAAAGTGCTGTTTCACACTGTTCCACAAACAGCA
TCAATTCTGCATCCTTGTGAATCCGATGAGGTTTCTCAGGTCACATGTTC
CAACCACATTTGCTTAGCTCTGATACGGACTGATGAGAATCACAGGAGCC
ACGTGTCACCTCTGTTCCGTTATGCTAGTGGCGCATAGGTCATGCGTTTT
GTTTGTCTACTTTGATGCACATCTTTGCGTTTTTTTGCCTCAATATTAAT
TCCCCCTCTTATTATTCCACCTTTTCTTTCCCCTTTATCTCCCTCTTTCT
CATCACTTATATTTATCTTCCACGAAATATTATTCTACTTAATTTCTCTA
CTACTTCCTGTTCCTTTATCCCTTTCTCTTTCCTCCCCTCTCTTCTTATT
TCCTTACCCTCTCTCACTTTTTTCATCTCCTTTTATTATTTTATTTATAT
TTTCTTTCACTCTTTTATCTTCTTTTCTTTTCACCCTTTTTCTTCTCTAT
TCCCCACTTTCCTTTCATTTCTTCTATTCTTTTTACTTTTCTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_p08.g1 MSMg01no382_p08.g1 CHROMAT_FILE:
MSMg01no382_p08.g1 PHD_FILE: MSMg01no382_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:51 2005
         (321 letters)



>mm_chr19_32642015_32642735
          Length = 721

 Score =  574 bits (297), Expect = e-168
 Identities = 315/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctttgctctgactgaggtagtttaagaacactgtccactgtaatttggacatgttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctctttgctctgactgaggtagtttaagaacactgtccactgtaatttggacatgttgtg 462

                                                                       
Query: 61  ggtagttggtatgagtgaggttgaaaccaggtactcaccaggtaccaccacaaacaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggtagttggtatgagtgaggttgaaaccaggtactcaccaggtaccaccacaaacaatcc 402

                                                                       
Query: 121 aaccccagtacattccctaggttgttcaagaatctatgctgtccctaactgaggctatag 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 401 aaccccagtacatttcctaggttgttcaagaatctatgctgtccctaactgagggtatag 342

                                                                       
Query: 181 tcagaagtgagcttcttggaaaagtgctgtttcacactgttccacaaacagcatcaattc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 341 tcagaagtgagcttcttggaaaagtgctgtttcacactgttccacaaagagcatcaattc 282

                                                                       
Query: 241 tgcatccttgtgaatccgatgaggtttctcaggtcacatgttccaaccacatttgcttag 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgcatccttgggaatccgatgaggtttctcaggtcacatgttccaaccacatttgcttag 222

                                
Query: 301 ctctgatacggactgatgaga 321
           |||||| ||||||||| ||||
Sbjct: 221 ctctgagacggactgaggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)