BAC Information

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BAC

Clone NameMSMg01-383G03
Chromosome19 (Build37)
Map Location 12,678,820 - 12,679,164
singlet/doubletsinglet
Overlap geneEG240549
Upstream geneMs4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik
Downstream geneGlyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383G03.T7 (MSMg01no383_g03.b1)MSMg01-383G03.TJ (MSMg01no383_g03.g1)
ACCAG487065AG487066
length748848
length of high quality
(start - end)
484 (27 - 510)207 (72 - 278)
definitionCHROMAT_FILE: MSMg01no383_g03.b1 PHD_FILE: MSMg01no383_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:26 2005CHROMAT_FILE: MSMg01no383_g03.g1 PHD_FILE: MSMg01no383_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTAGGGAT
CTGAACTCTGGTCTTCATGGTTGCTTTATAAGTACTTTATTCACTAATCA
ATTTCTGCAGCTGTGGGAGCTTATGTTTTGAAACAAGATCTTCGAGGAAG
CCCATTAATTCAGTTATAAGCCCCCAGTGATCCACCTGTATCATCCTTTC
CTGCACTAGGATTATAGGTGCATGTTGTGCCTGGCTTCTTGTATGGGTGC
TGGGGATCTGAAGACCTCATACTTCTTCAAGACATTCTTCAACAACTAAC
TAAGCCTGCTCTCTAGCGCTGAGAAGAGATATTTGGAGATAAAATTGGGA
AGAGTAGTTTCTCTTTTTCTTAATTTTTTAATTAGATATTTTCTTCATTT
ACATTTCAAATTCTATCCCAAAAGTCCCCTATATCCTCCCCCCCCCCCGC
CCTGGTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTG
TACTGGGGCATATAAAGTTTGCCAGACCAAGGGGCCTCCGGGAAGAGCAG
CTTCTATGTCTGGTTTTGTATGCTTTGCGGCTGGGCGGTCTCTTATCCCC
CCTATCTTCCCCTACGCGCTCTTTCTTCCTTGTCTGCGCTTTCCCCGCTC
CTTCCTCTCTCCCTACTCCATCCGCGCATTGATCGGCAACCCTTTTACTA
CGACAGTCTCCTCCTACATTCCACCAATTCCTTTTCCCCCTACACTTA
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGGGACTAAATCACCAGCCAAAGAGTA
TACATGGAGTGACTCATGGCTCCAGCTGCATGTAGCAGAGGATGGCCTAG
TTGGTCATCAATGGGAGGAGAAGCCCTTTGTCCTGTGAAGGTTCTATGCC
CCATTGTAGAGGAATGCCAGGTCCAGGAAGCAGGTGTGAGTGGGTTGGTG
AACAGGGGGAGGTAATAGGGGGTTTTTNTTTTNTTTTTTTTTTCGTTTTT
CGGTTTCTTCCGTTTTGTTTTTTTTTGTTCTCTTCGCTTTTTTCCGCTTT
CTTGTTCTCGTCTTCGTCTCCTCGTCTCGCTTGTGTTTGCCTTTCCGTTT
TTTGCTTTTTGTTTCTTTCCTTCTTTTGTTCCCTGTTTTTTTCCTCGCTG
TTCTTTTCGTTTCGTTTTCCTCTTTCGTTTTCTCGTTGTTCTTCTTTTCT
TTTCGTTTCTTTTCCTTCCCTCGTTCTTTTTTTTTCTTCTCTTTCTTCTC
CTCTTCTCCTCCTTTTTCGTCCGCTCGTCTCGTGTTTTTTTTTTCTTTCC
TCTCTTTTCTCCCCCTTCTCCCTCCTCTTCCTCTCTCCCTTCTTCCTCTT
CTCTCCTCTTCCCTTCTCCCCTCTTTCCCTTCCCCTCTTCCCTCCTCGTC
TCTTTTTCTCTTCTGTCCTCCCTCCCCTCCCCCCTCTTTTTCCTCTGCTT
CTTTTTTTCTTTTTTCTCCCGTTATTTCAATCCACCTTTTCTATCTCTTT
CCTCATCTTTGTTTTCTCCTCCTTTCTATCTCCTATCTCTTATTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_g03.b1 MSMg01no383_g03.b1 CHROMAT_FILE:
MSMg01no383_g03.b1 PHD_FILE: MSMg01no383_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:26 2005
         (484 letters)



>mm_chr19_12678820_12679703
          Length = 884

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%), Gaps = 2/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattctagggatctgaactctggtcttcatggttgctttataagtactttattcactaa 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gaattctagggatctgaactctggtcttcatggttgctttataagtactttattcactaa 286

                                                                       
Query: 72  tcaatttctgcagctgtgggagcttatgttttgaaacaagatcttc-gaggaagcccatt 130
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 285 tcaatttctgcagctgtgggagcttatgttttgaaacaagatc-tctgaggaagcccatt 227

                                                                       
Query: 131 aattcagttataagcccccagtgatccacctgtatcatcctttcctgcactaggattata 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aattcagttataagcccccagtgatccacctgtatcatcctttcctgcactaggattata 167

                                                                       
Query: 191 ggtgcatgttgtgcctggcttcttgtatgggtgctggggatctgaagacctcatacttct 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ggtgcatgttgtgcctggcttcttgtatgggtgctggggatctgaagacctcatacttct 107

                                                                       
Query: 251 tcaagacattcttcaacaactaactaagcctgctctctagcgctgagaagagatatttgg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tcaagacattcttcaacaactaactaagcctgctctctagcgctgagaagagatatttgg 47

                                                         
Query: 311 agataaaattgggaagagtagtttctctttttcttaattttttaat 356
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  agataaaattgggaagagtagtttctctttttcttaattttttaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)