Query= MSMg01no383_m02.b1 MSMg01no383_m02.b1 CHROMAT_FILE:
MSMg01no383_m02.b1 PHD_FILE: MSMg01no383_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:53 2005
(571 letters)
>mm_chr19_26621358_26622333
Length = 976
Score = 1013 bits (524), Expect = 0.0
Identities = 558/572 (97%), Gaps = 5/572 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagtctctgtgtctttcaataactgccatacctacacagagtctggctggtgtt 64
|||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 205 gaattcaagtctctgtgtatttcagtaactgccatacctacagagagcctggctggtgtt 264
Query: 65 ccccactctcttttcaatggtcagtttgactctgagtgggcttctaagacacatgctgaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccactctcttttcaatggtcagtttgactctgagtgggcttctaagacacatgctgaa 324
Query: 125 tcatctcagagttttaagaatagcatcggtacctgggctccctgaggtgtcacagcgctt 184
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 325 tcatctcagagttttaagaatagcgtcagtacctgggctccctgaggtgtcacagcgctt 384
Query: 185 gagagctagctcataaactgactctcttcttgagatctgctccgaggacctgggttgctc 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 gagagctagctcataaactgactctcttcttgagatctgctctgaggacctgggttgctc 444
Query: 245 ttggatcgtaattagtcttcccaacctgtcaggtttgctcttaacaaacaaaattatctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggatcgtaattagtcttcccaacctgtcaggtttgctcttaacaaacaaaattatctc 504
Query: 305 aaggggagaaaaagctgtattaatcaatcctgaagggtttctattttttcccccattagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggggagaaaaagctgtattaatcaatcctgaagggtttctattttttcccccattagg 564
Query: 365 aatacagcagagtgactttaatgttaaaaggacatttcagaccacaaaaggccagtgact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatacagcagagtgactttaatgttaaaaggacatttcagaccacaaaaggccagtgact 624
Query: 425 ttagagggatatttcctgatgcatttggcacttttaaaatctctgctgctttggctcccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttagagggatatttcctgatgcatttggcacttttaaaatctctgctgctttggctcccc 684
Query: 485 ccccc-----caatataaaccctctcctagtttctagcatgggtatttctgaaattcatc 539
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccccctcccccaatataaagcctctcctagtttctagcatgggtatttctgaaattcatc 744
Query: 540 tactgccatttttctgtattgtccaacagatt 571
||||||||||||||||||||||||||||||||
Sbjct: 745 tactgccatttttctgtattgtccaacagatt 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 976
Length adjustment: 10
Effective length of query: 561
Effective length of database: 966
Effective search space: 541926
Effective search space used: 541926
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_m02.g1 MSMg01no383_m02.g1 CHROMAT_FILE:
MSMg01no383_m02.g1 PHD_FILE: MSMg01no383_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:53 2005
(513 letters)
>mm_chr19_26757624_26758536
Length = 913
Score = 915 bits (473), Expect = 0.0
Identities = 500/509 (98%)
Strand = Plus / Minus
Query: 1 ctgaaggaagtctcacagagtgaaactcattatggatttcattgcctactgaaatcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ctgaaggaagtctcacagagtgaaactcattatggatttcattgcctactgaaatcacac 591
Query: 61 atgctatcaagacagattgaggccagccatctaacacctccaaattctctccctacctgc 120
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 590 atgctatcaagccagattgaggccagccatctaacacctccaaattctcttcctacctgc 531
Query: 121 ctgtcccatgggaataaaatttatgacctccaaataagtgtctatgcctcagctcctaga 180
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 530 ctgccccatgggaataaaatttatgacctccaaataagtgtctatgtctcagctcctaga 471
Query: 181 tctgtgggaaacagtcctagaaagcaagtttcatgttaatagtaggaacagtcccagact 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctgtgggaaacagtcctggaaagcaagtttcatgttaatagtaggaacagtcccagact 411
Query: 241 tcacagaatatgggcagcaataaagactgacttaaggcagacggacacacaatgggaaaa 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcacagaatatgggcggcaataaagactgacttaaggcagacggacacacaatgggaaaa 351
Query: 301 gggggcaagggtttgtgtgttcctatgtccgtttaagcccttgacttttcttgtgtccag 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 350 gggggcaagggtttgtgtgttcctatgtccgttcaagcccttgacttttcttgtgtccag 291
Query: 361 tgcagaaacaagcagaaggatgtgtgcttgagtatggaaatgggagaacaagagtgggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgcagaaacaagcagaaggatgtgtgcttgagtatggaaatgggagaacaagagtgggtc 231
Query: 421 acctttatgctcctccattacagccctgtctgtggtggtaggaatgaaaatggccccaca 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 acctttatactcctccattacagccctgtctgtggtggtaggaatgaaaatggccccaca 171
Query: 481 gactcatggggaatggcagaattaggagg 509
||||||| |||||||||||||||||||||
Sbjct: 170 gactcatagggaatggcagaattaggagg 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
