BAC Information

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BAC

Clone NameMSMg01-383N21
Chromosome19 (Build37)
Map Location 15,228,795 - 15,229,313
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225
Downstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383N21.T7 (MSMg01no383_n21.b1)MSMg01-383N21.TJ (MSMg01no383_n21.g1)
ACCAG487437AG487438
length777769
length of high quality
(start - end)
481 (42 - 522)519 (69 - 587)
definitionCHROMAT_FILE: MSMg01no383_n21.b1 PHD_FILE: MSMg01no383_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:01 2005CHROMAT_FILE: MSMg01no383_n21.g1 PHD_FILE: MSMg01no383_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATCCCTAGTGACCATTTAAAAATCTGAACATGGGGGGGAGGCGACCTC
AGCCTCAGCAGCAGCGGTCGCCATCTTGGTTCCGGGACTCAGCAGAATTT
AGGAAATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCT
TCTGGGACGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGC
CGCAGATAACCGGCCACCATCCGGACCAGAGGACAGGTGTCCGCCTGGCT
CGGGAGACGGCCTCGGCCTCAGGAGCAGCGGTCACCATCTTGGTTCCAGG
ACTCCCTGGAACTTAGGATTTTAGTCTGCACAGGTGAGAGTCTGCACCAC
AGAAGCTGACAGCTTCTGGGAACTGCCAAAGCAACACAGCTTCTGAGAGA
GGCCCTGTTTTGGGCCTTCTTCTTCGACCAGGAGGAGGTCCAAAAACAAG
ATATCTGCGTACCTTCCCTGTAAGAGAGCTTGCCAGCAGAGAGTGGTCTG
AGCACTGTAACTCAGAGGAGAGAATCTGTCTCCCAGGTCTGCTGAGAGAC
GGTTAACGGATTCCCCCGAAGAACATTCTCTAACCGGAGCCACCTTTACT
TACTAACTCCGGAGATTTCCGAAGGGCGGAAGGGAACCGTACGAACTCTT
CTTTTCCGGGACCAGGACCCTTCCCCTCTCTCTTAAACCCAGCAGTCTCC
CTTTTCCCCCCCCCCTGGGTGACCCCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGATAGCTCTTGGATGGGTAGGTGCACGTGTG
CAACCCATCCGGAGCACAGAGCAGTTAACAAACCTCTACACCCAGCTGGT
AGAATTATTATTTGGGAAGGATTAAGAAGGATGGCTTTGTTGGTGGTGTG
TCAATGGGGCAGGCTTGGAGATTTCAAAGAATCAAGCTATTTCACACTAG
TTATCTCTGTTTCCTGGTTGCTGTTCAAAGTGTGAGCTTTCCAGATTATA
TGAATTTCCTATCAATAAAAAAAGAAAACACAACAGTGTTTTATTCTTCA
AGAACAAATAAAAAATGACATTCCCATCAGAACAATGGTAAAATATGGTA
ATAATCTTCTAAAAAATTGGGTGGAAGCTATCATATTTATGCAGTGTTTT
TCACAGGTAGATATGTCCAACAGACCTACTGTCAGCAGCTGGATTTCTTC
TCTTCAAATGTCACTGTAAGAAACTTGGATGTTGTTCATCCCAGTCGGGA
TTTTTAAGATCTTTTCTGGAGTTCTTCCCATACTGAGGCAAAGGCTGAGT
TAATACTGANGGAAAGAGAAACATTTCCAGACTTACAGTTCTAAAGAAAG
CCTCTTTTCAGAGTATATGAAATTTCCACACGTGTAACATTGAGAATTCC
TCAGTGGCAGAAACACACTTGTGGGAAAAGGTGGCTGGAAATTGAAAAAC
CCTCCCCGGCGAAAAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_n21.g1 MSMg01no383_n21.g1 CHROMAT_FILE:
MSMg01no383_n21.g1 PHD_FILE: MSMg01no383_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:01 2005
         (519 letters)



>mm_chr19_15228595_15229513
          Length = 919

 Score =  957 bits (495), Expect = 0.0
 Identities = 513/519 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatagctcttggatgggtaggtgcacgtgtgcaacccatccggagcacagagcagttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatagctcttggatgggtaggtgcacgtgtgcaacccatccggagcacagagcagttaa 260

                                                                       
Query: 61  caaacctctacacccagctggtagaattattatttgggaaggattaagaaggatggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaacctctacacccagctggtagaattattatttgggaaggattaagaaggatggcttt 320

                                                                       
Query: 121 gttggtggtgtgtcaatggggcaggcttggagatttcaaagaatcaagctatttcacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggtggtgtgtcaatggggcaggcttggagatttcaaagaatcaagctatttcacact 380

                                                                       
Query: 181 agttatctctgtttcctggttgctgttcaaagtgtgagctttccagattatatgaatttc 240
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 agttatctctgtttcctgggtgctgttcgaagtgtgagctttccagattatatgaatttc 440

                                                                       
Query: 241 ctatcaataaaaaaagaaaacacaacagtgttttattcttcaagaacaaataaaaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatcaataaaaaaagaaaacacaacagtgttttattcttcaagaacaaataaaaaatga 500

                                                                       
Query: 301 cattcccatcagaacaatggtaaaatatggtaataatcttctaaaaaattgggtggaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattcccatcagaacaatggtaaaatatggtaataatcttctaaaaaattgggtggaagc 560

                                                                       
Query: 361 tatcatatttatgcagtgtttttcacaggtagatatgtccaacagacctactgtcagcag 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tatcatatttatgcagtgtttttcacaggtagatctgtccaacagacctactgtcagcag 620

                                                                       
Query: 421 ctggatttcttctcttcaaatgtcactgtaagaaacttggatgttgttcatcccagtcgg 480
           |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct: 621 ctggatttcttctcttcaaatgtcactgtaaggaacttggaagttgttcatcccagccgg 680

                                                  
Query: 481 gatttttaagatcttttctggagttcttcccatactgag 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatttttaagatcttttctggagttcttcccatactgag 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)