BAC Information

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BAC

Clone NameMSMg01-384C02
Chromosome19 (Build37)
Map Location 27,587,993 - 27,805,013
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384C02.T7 (MSMg01no384_c02.b1)MSMg01-384C02.TJ (MSMg01no384_c02.g1)
ACCAG487639AG487640
length740741
length of high quality
(start - end)		600 (34 - 633)565 (64 - 628)
definitionCHROMAT_FILE: MSMg01no384_c02.b1 PHD_FILE: MSMg01no384_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:21 2005CHROMAT_FILE: MSMg01no384_c02.g1 PHD_FILE: MSMg01no384_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,804,445 - 27,805,013)(27,587,993 - 27,588,557)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAACCC
AGGTTCCAATGCTTGCACAGCGAGCTCTCCCTCACTAAGACATAGCTTCA
GCCCATTTCCTTCCTTTTTCATGGTTACATTATACTCCATGGTCCAGATG
TGTCAATTGGAATCAACTCACTTATATTGCTTGCAATATCTTTAGGTCTA
CATACCCTGTCAGGTCCTAAGACCACTGGAAATCTGTGTTTTCCAATAGC
CACAACCCAGGTTGAGAACTACTGCTCTAGGGTATGTTGACCTCTGAAGT
GGGTTGAAGGAAAGTGATGATAATACTCATTTGGACCTTAAACTCTAGCC
TCCTCCATGAGGTCTGTCTATAGTCCTTCTACAAAGGGATTACTGGGTAA
ACGATATGAGTATTGGAAATCTGGCAGCTGCTAGAGCATAGTGCCCCCTT
AACTACTGAGCCAACTCTCCAACCTCACACGTCTCATCTTAGGTGATCTT
ATATTTCTTTCTAGCGTGTGAATAGACGACATATATCTTGTGGAAATTCA
CCTTCCAGAATACTTCTTTATCTCTCAATTATGGTAATGAAGACTAAAAG
TAGTCCTTTACGTTGTCATTGACTGACTAATAGGTGTGTTATTTGGCATT
GACTAATTGTCATATATAAATGTGCCAATTGTCATTTTAATTGTTCAGAA
AACAAGCTCAATGCTATTTGAGAAAACTAGATTGTTTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATCCTGAATTCTTCAGACACTTGAATCAGAAATGTCC
TTTCTTAAGCCATTTCTCAGTGGCTTTTTGTCATTTTAAAGCCCAGGATT
CCTGTATTAAGAAATAAAGAATTCTATCTGGGCTATAAACACAACTCTAA
GAGGAGGCATGTTGTAACTTCCTGGTGAAGACCAAATTGCATGCTTCTAG
CCCAGCGTGTAGCATCAGGCTGGGGGATGGTGTAGTAGATATCTACTTGA
CTTGGCAGTTCTGTCTGAGGCCATAGAAACTGATATAGAGAACCCTGACA
CCACAGATATGAGTGTGGGTATGAGTGTGCCCAGAGGTAGAACATTGCAG
GGCAGTCACAAAGTGTGACATAGGTTCCAGAAAAAAAGATTGATACAGAA
ATACAGTCTTGTTTTAAGAGCAAAATCAAGATGAATTCAATAGATATAAC
CTGCAATGTAGTGAAACAGGCTCTCATCCTTCCTAATGCTGTGACCCTTT
AATGCAGTTCCTCATGTGTGGTGATCCCCCAACCATAAATTTACTTCTTA
ACTAGNTTTGTTACTGTTATCTACTTTTATGANATACAGTGTAACCATCT
GATGTGCCGGATATCTGATATGTGACTCCCAAGGGGGTGGGGCGTGGTCC
GATCCACGGTTGGAACATTTGGCCCTATTTCCTTAGGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_c02.b1 MSMg01no384_c02.b1 CHROMAT_FILE:
MSMg01no384_c02.b1 PHD_FILE: MSMg01no384_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:21 2005
         (600 letters)



>mm_chr19_27804445_27805444
          Length = 1000

 Score = 1031 bits (533), Expect = 0.0
 Identities = 560/569 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaacccaggttccaatgcttgcacagcgagctctccctcactaagacatagct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctgaacccaggttccaatgcttgcacagcgagctctccctcactaagacatagct 510

                                                                       
Query: 65  tcagcccatttccttcctttttcatggttacattatactccatggtccagatgtgtcaat 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 509 tcagcccatttccctcctttttcatggttacattatactccatggtccagatgtgtcaaa 450

                                                                       
Query: 125 tggaatcaactcacttatattgcttgcaatatctttaggtctacataccctgtcaggtcc 184
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 449 tggaatcaactcacttacattgcttgcaatatctttaggcctacataccctgtcaggtcc 390

                                                                       
Query: 185 taagaccactggaaatctgtgttttccaatagccacaacccaggttgagaactactgctc 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 taagaccactggaaatctgtgttttccaatagccgcaacccaggttgagaactactgctc 330

                                                                       
Query: 245 tagggtatgttgacctctgaagtgggttgaaggaaagtgatgataatactcatttggacc 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tagggtacgttgacctctgaagtgggttgaaggaaagtgatgataatactcatttggacc 270

                                                                       
Query: 305 ttaaactctagcctcctccatgaggtctgtctatagtccttctacaaagggattactggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttaaactctagcctcctccatgaggtctgtctatagtccttctacaaagggattactggg 210

                                                                       
Query: 365 taaacgatatgagtattggaaatctggcagctgctagagcatagtgcccccttaactact 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 taaacgatatgagtgttggaaatctggcagctgctagagcatagtgcccccttaactact 150

                                                                       
Query: 425 gagccaactctccaacctcacacgtctcatcttaggtgatcttatatttctttctagcgt 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 149 gagccaactctccagcctcacacgtctcatcttaggtgatcttatatttctttctagtgt 90

                                                                       
Query: 485 gtgaatagacgacatatatcttgtggaaattcaccttccagaatacttctttatctctca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  gtgaatagacgacatatatcttgtggaaattcaccttccagaatacttctttatctctca 30

                                        
Query: 545 attatggtaatgaagactaaaagtagtcc 573
           |||||||||||||||||||||||||||||
Sbjct: 29  attatggtaatgaagactaaaagtagtcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_c02.g1 MSMg01no384_c02.g1 CHROMAT_FILE:
MSMg01no384_c02.g1 PHD_FILE: MSMg01no384_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:21 2005
         (565 letters)



>mm_chr19_27587793_27588757
          Length = 965

 Score = 1033 bits (534), Expect = 0.0
 Identities = 557/565 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctgaattcttcagacacttgaatcagaaatgtcctttcttaagccatttctcagtgg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atcctgaattcttcagacacttgaatcagaaatgtcctttcttaagacatttctcagtgg 260

                                                                       
Query: 61  ctttttgtcattttaaagcccaggattcctgtattaagaaataaagaattctatctgggc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttgtcattttaaagcccagaattcctgtattaagaaataaagaattctatctgggc 320

                                                                       
Query: 121 tataaacacaactctaagaggaggcatgttgtaacttcctggtgaagaccaaattgcatg 180
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||
Sbjct: 321 tataaacacaactctaagaggaggtatgttgtaacttcctggtgaggaccaaactgcttg 380

                                                                       
Query: 181 cttctagcccagcgtgtagcatcaggctgggggatggtgtagtagatatctacttgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctagcccagcgtgtagcatcaggctgggggatggtgtagtagatatctacttgactt 440

                                                                       
Query: 241 ggcagttctgtctgaggccatagaaactgatatagagaaccctgacaccacagatatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagttctgtctgaggccatagaaactgatatagagaaccctgacaccacagatatgag 500

                                                                       
Query: 301 tgtgggtatgagtgtgcccagaggtagaacattgcagggcagtcacaaagtgtgacatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgggtatgagtgtgcccagaggtagaacattgcagggcagtcacaaagtgtgacatag 560

                                                                       
Query: 361 gttccagaaaaaaagattgatacagaaatacagtcttgttttaagagcaaaatcaagatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttccagaaaaaaagattgatacagaaatacagtcttgttttaagagcaaaatcaagatg 620

                                                                       
Query: 421 aattcaatagatataacctgcaatgtagtgaaacaggctctcatccttcctaatgctgtg 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 aattcaatagatataacctgcaatgtagtgaaacaggctctcagccttcctaatgctgtg 680

                                                                       
Query: 481 accctttaatgcagttcctcatgtgtggtgatcccccaaccataaatttacttcttaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accctttaatgcagttcctcatgtgtggtgatcccccaaccataaatttacttcttaact 740

                                    
Query: 541 agntttgttactgttatctactttt 565
           || ||||||||||||||||||||||
Sbjct: 741 agttttgttactgttatctactttt 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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