BAC Information

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BAC

Clone NameMSMg01-384P15
Chromosome19 (Build37)
Map Location 51,444,221 - 51,444,818
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384P15.T7 (MSMg01no384_p15.b1)MSMg01-384P15.TJ (MSMg01no384_p15.g1)
ACCAG488285AG488286
length728727
length of high quality
(start - end)
599 (56 - 654)513 (64 - 576)
definitionCHROMAT_FILE: MSMg01no384_p15.b1 PHD_FILE: MSMg01no384_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:24 2005CHROMAT_FILE: MSMg01no384_p15.g1 PHD_FILE: MSMg01no384_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAGTT
TATCAACTTATACCTCCTATAATGGGGGAAAAAAAAAGGTTCTTAGTTGT
TGTGTTAAATCTCCTCCCAAATGTGCCCCAGCGATGAAAACACAACACAG
TTCATATGATTACCTGCTGTGCGCCTGGATGGGGCAGATCTACCGCTACA
TTACCATCTTCCACAGCTTATGAGACCCCTTAGAACTTGTTTCTCCAGGC
CATGTGCTTCTGCTCTGCTTTTCTCCTTCTTCCTCCTCCTCTGCCTCCTC
TCCCTCTTCCATTTTCTGTTCGTCTTCCTTCCTTCTGCTCCACCTTCCCT
TTTACCTGCCCAATCATCAGCTCTCCTTTATTCTACAAATTAAGGTGGGA
AACAGGTTTACAGGAAATCACCTGAGAGCTGACTCACTCCTTGTTCACAC
TCACAGGAGAATGGAATTAACATCACCTATAATTAGCCCCAGGGATATCC
ACAACACTTAGTAATCCTTCTTTCAAAGGAGCCACCATGCTGATGTGCAA
CTGTTCATTATCACGGGTGATATCATTGCAGAATAAAACTGCTCAAGCCA
TACTGCTGAACTCGATCTTCCACCAACTGGTGAGACTCCTTACTAACCTT
AGGTGTACCACACCCAAAGACAGCGCGAATAATGACTCCCGAATGTGTCC
TATTTGGGATGGTATTTAATTATTGACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGTTTAGCTCTCTACCCCATTTTTTAATAGGGTTA
TTTGATTTTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATATACTGGATAT
CAGTCCCCTTTCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGGCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGTTTTGC
AATTTTATGAGGTCCCATTTTTTTTTATTCTTGATCTTACAGCACAAGCC
ATTGCTGTTCTGTTCAGGAATGTTTCCTCTGTACCTATATCTTTGAAGCT
TTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGA
GTTCCTTGATCCACTTAGATTTGAGCTTTGCACAAAGAGATAAGAATGGA
TCAATTGGCATTCTTCTACATGATAACCACAGTTGTGCCAGCACCATTTA
TTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTTGCTCCCTTGTCAAA
GATCATGTGACCATCCATCCCATATACAACCACCAAACCCAGACACTATT
GCATATGCCAGAAAGATTTTGCTGACAGGACCCTCAAACAGCTATCTCTT
CTGAGGTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCATAGTCCT
CTATTGTATGGACACCGGGCCCCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_p15.b1 MSMg01no384_p15.b1 CHROMAT_FILE:
MSMg01no384_p15.b1 PHD_FILE: MSMg01no384_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:24 2005
         (599 letters)



>mm_chr19_51444021_51445018
          Length = 998

 Score = 1127 bits (583), Expect = 0.0
 Identities = 595/599 (99%), Gaps = 1/599 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttatacctcctataatgggggaaaaaaaaaggttcttagttgttgtgttaaatctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 acttatacctcctataatgggggaaaaaaaaaggttcttagttgttgtggtaaatctcct 260

                                                                       
Query: 61  cccaaatgtgccccagcgatgaaaacacaacacagttcatatgattacctgctgtgcgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaaatgtgccccagcgatgaaaacacaacacagttcatatgattacctgctgtgcgcc 320

                                                                       
Query: 121 tggatggggcagatctaccgctacattaccatcttccacagcttatgagaccccttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggatggggcagatctaccgctacattaccatcttccacagcttatgagaccccttagaa 380

                                                                       
Query: 181 cttgtttctccaggccatgtgcttctgctctgcttttctccttcttcctcctcctctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtttctccaggccatgtgcttctgctctgcttttctccttcttcctcctcctctgcc 440

                                                                       
Query: 241 tcctctccctcttccattttctgttcgtcttccttccttctgctccaccttcccttttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctctccctcttccattttctgttcgtcttccttccttctgctccaccttcccttttac 500

                                                                       
Query: 301 ctgcccaatcatcagctctcctttattctacaaattaaggtgggaaacaggtttacagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcccaatcatcagctctcctttattctacaaattaaggtgggaaacaggtttacagga 560

                                                                       
Query: 361 aatcacctgagagctgactcactccttgttcacactcacaggagaatggaattaacatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcacctgagagctgactcactccttgttcacactcacaggagaatggaattaacatca 620

                                                                       
Query: 421 cctataattagccccagggatatccacaacacttagtaatccttctttcaaaggagccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctataattagccccagggatatccacaacacttagtaatccttctttcaaaggagccac 680

                                                                       
Query: 481 catgctgatgtgcaactgttcattatcacgggtgatatcattgcagaataaaactgctca 540
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 681 catgctgatgtgcaactgttcattatca-gggtgatatcactgcagaataaaactgctca 739

                                                                      
Query: 541 agccatactgctgaactcgatcttccaccaactggtgagactccttactaaccttaggt 599
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcaatactgctgaactcgatcttccaccaactggtgagactccttactaaccttaggt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space:   581932
Effective search space used:   581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)