XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAAGAT
TTTTACATGTATTTTTGTATCTTTATTTTTAAAATGAAATTATATTTTAT
GAAATATATTCCTTGATTACTATACCATAGGTCATACTTTGGAAATAGTT
TTATTAGGCATGGAAAAGTTATTACAAGCCCTTTGTGTAGGGTAGGTTTC
TATTTTTTAGGAAAGTCAATATGTATAAAAATAAAAACAATAACAAAAAA
TAGTATCAAAATGAGAGACAAAAGAAGATGGAATATAAAGATTAGCCATT
ACAGCAGTAATGAATCAGGTGATCATGAGAATTCAACTAAGCCAGTGTTA
GTAGTTCATTGAAAATATAAAATCAGTTAAATTAATCTATGTGCATCTGC
CTAAAAGTATATTTGAATAAGAGCAGTGCAACTGTTTCAGGTTATTGAAT
ATGTGCTACACTTGGTAATAGGAAACCCTTGAGCATGTCTGAGAAGGTTC
CCTTGAAGTTTAACTTACCAAGTGCTTTTTATTTAGGGAACAGCTGTCCC
TATGGTTATGGTATGAATCTTGTATTTAAGGATATGTATTTCCATAAAAC
ATTGCCTTTAAATAGGAGTCAACCACTTCAGCTGAGACTCAATATGTTGC
AGTGCTGCAAGCAAAACTTGGCTATGTTGCACTTGCTGAGAATCCATATG
TTCAGTTCTAACATATGGCTTCCCCAATCCCTCCTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCTGAAACCATCAGGCAGCAAGATGTAATAACTAAGGCTGGA
ATTAATTAAATGTAAAGAGAGAAAACATTATGTAAAACCATCATTTAAAA
TATTGACTGTTTGAATATGAAACCCNNNCNNACNTCCCCAAANAGAAAGA
GACTAGGGGAGGGAGGGGGAGGTGGCGGGTGTAGGTGGGTAGGGTGGTGA
GTGGTTGCCAAAAAATTTTATAAACCTACAAGAACTACTTTAAAANNNTN
NNNNNAAAAACTTTATAAAACCTNNAAAAAGGCAAAAATTCCAAANGGCC
TTTGAACCTTATAAACCCCCTCCAAAAAGGTAAAAAAATTTTAAAAGAAT
TCCCCAAAACCCCAAATCCTTTACGCCCCCCATTTTTCCTACCCAAAAAA
AAAGCCCGGGAGGGAAAATTTTCCCGGGAAAATTCTCCTCCAACCCCATT
TTTAAAAAACCCAAAAAAAAACTCCGGATTTTCTTCTAAAACTCTTTAAA
AACACATTTTTTCCCCGGGACCCTTTTAAAATCTCCCCCCGCGTTCCTCC
CCCCNATTTTTTTTACCCCCCTTGAAAAAAAACAAAATATTTTTTTTCTT
TTTCCCCCCCCCCTTCCCTAAATAACCCCCCCCCCCCACCCCCCCTCTTT
TTACAAATTTTTCCCAAAAAACTCCCCCCGCTTTTTTCTTTTTTAAAAAA
AATTGCCGCCCAACCCCCTCCCCTCCCCCCTCTTTTTGTTTTTTTTTTTT

Query= MSMg01no385_j24.b1 MSMg01no385_j24.b1 CHROMAT_FILE:
MSMg01no385_j24.b1 PHD_FILE: MSMg01no385_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:15 2005
         (580 letters)



>mm_chr19_35603165_35604143
          Length = 979

 Score = 1075 bits (556), Expect = 0.0
 Identities = 571/576 (99%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataagatttttacatgtatttttgtatctttatttttaaaatgaaattatatt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataagaattttacatgtatttttgtatctttatttttaaaatgaaattatatt 264

                                                                       
Query: 65  ttatgaaatatattccttgattactataccataggtcatactttggaaatagttttatta 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 ttatgaaatatattccttgattactataccataggccatactttggaaatagttttatta 324

                                                                       
Query: 125 ggcatggaaaagttattacaagccctttgtgtagggtaggtttctattttttaggaaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcatggaaaagttattacaagccctttgtgtagggtaggtttctattttttaggaaagt 384

                                                                       
Query: 185 caatatgtataaaaataaaaacaataacaaaaaatagtatcaaaatgagagacaaaagaa 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 caatatgtataaaaataaaaacaataacaaaaa-tagtatcaaaatgagagacaaaagaa 443

                                                                       
Query: 245 gatggaatataaagattagccattacagcagtaatgaatcaggtgatcatgagaattcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatggaatataaagattagccattacagcagtaatgaatcaggtgatcatgagaattcaa 503

                                                                       
Query: 305 ctaagccagtgttagtagttcattgaaaatataaaatcagttaaattaatctatgtgcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctaagccagtgttagtagttcattgaaaatataaaatcagttaaattaatctatgtgcat 563

                                                                       
Query: 365 ctgcctaaaagtatatttgaataagagcagtgcaactgtttcaggttattgaatatgtgc 424
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 ctgcctaaaagtatatttgaataagagcagtgcaagtgtttcaggttattgaatatgtgc 623

                                                                       
Query: 425 tacacttggtaataggaaacccttgagcatgtctgagaaggttcccttgaagtttaactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tacacttggtaataggaaacccttgagcatgtctgagaaggttcccttgaagtttaactt 683

                                                                       
Query: 485 accaagtgctttttatttagggaacagctgtccctatggttatggtatgaatcttgtatt 544
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accaagtgcttcttatttagggaacagctgtccctatggttatggtatgaatcttgtatt 743

                                               
Query: 545 taaggatatgtatttccataaaacattgcctttaaa 580
           ||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaggatatgtatttccataaaacattgcctttaaa 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)