BAC Information

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BAC

Clone NameMSMg01-385K11
Chromosome19 (Build37)
Map Location 38,462,853 - 38,463,422
singlet/doubletsinglet
Overlap genenone
Upstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
Downstream geneTmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385K11.T7 (MSMg01no385_k11.b1)MSMg01-385K11.TJ (MSMg01no385_k11.g1)
ACCAG488804AG488805
length756743
length of high quality
(start - end)		576 (28 - 603)492 (61 - 552)
definitionCHROMAT_FILE: MSMg01no385_k11.b1 PHD_FILE: MSMg01no385_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:17 2005CHROMAT_FILE: MSMg01no385_k11.g1 PHD_FILE: MSMg01no385_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTCCGAGAGGATCCGCGGAATTCTCTGTTCAGCT
TAGGTAAAATGCATCTTGATATTCCAGAGAAGTTTCCATGTTCTGCTAAG
AGCCAGTTATTGCATCTCATTTACTAACAACTCCGCAGAGTAGTCAGAGG
TGGATAATACCATCTCCATTAACTGAAGGAGGTAATTGAGTCTTCAAGGG
TGCTTAGATAGGCGAGGCCATGCCTTCAGGCCATAACTAGGATTCTCTCA
ATACTGAACCTCAAGTCCAGTATTATTTCTGCTGTAACTGGTAAGTGCCT
ACATGTATAAAGTCTAACTTCACTCCCTCGTTTGGTAACTTGGTTGCCTC
CTAGACCTAGAACAGGTTAGGCATGTTCATCCTTGTGCAGAATCTAGGCA
AGCATTTAAAGCAAGCAAAGAGATGGGGAAAAGAAGCTAAACATAAAAAG
TACTTTAGCAAATCCAGAAAGCAAATGATATAAACCTTTAGCTTTACTGG
GCTGTGTCAGGTTATTTGAATTTTCTATCTGGCCAAATTAAGAATGGAAT
TACAGGAGGCAGGGAGAGAAGAGAGGGGGTCGGGGAGATATTGAATTTTG
GAGAAAATATAATTAAGTTCTACTCTATCTTTATAATGTTTTTTTTCCTT
TGTCATATGGGGCAAAGGNATGTATTCTTCTAGTTTGAAATATTGGAAAA
TTCCATACCATTAAACTTATTTTTTGGAAAAAGAATTAAATCCTTTCCTC
ACCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCTTTTTAGTTCTGTGCTCCATTTTTTTAATATTTGATGT
AGGATTAGTGAAGATCTTTTCCAAATCTGTAGGTTGCTGTTTTGTCCTGT
TGACATCATCCTTTGCCTTACAGAAGCTTTTCAGTTTCATGAGGTCCCAT
TTGTCAATTGTTGATCTTAGAGCATGAGCCATTAGTGTTCTGTTCAGGAA
ATTTTTCCCTGTGCCAATGCTTTCGAGGCTATTTCCCACTTCCTCTTCTA
ATAGATTCAGTATATTTGGTTTTACATTGAGGTCCCTATCCACTTGCACT
TGAGCTTTGTACAAGTTGATAAATATGGCGTTCTCCCACAAGCAGACCAC
CAGTTCAACAAGCATCATTTGTTGAAGATGCTTGCGTACATGGGCTGGTC
GTGGTTCCTGGCACATAAGTAGCAGAAGACTGCCTTGTCTGGTCTCAGTG
GGAGAGGATCCTAATCCTGTAGATACTTGATGGAAGATACAGGGGTGGGA
GGTAGGGGGTTTTTTTTTTTTTTTTTTTTTCGCTNTTTTTTTTTTTTTTT
TTCCCCCTTCTTTTCTTTTCTCCTCTTTTTTTCCCCCTTCTTCTCCCCCC
CCTCTTCCTCTTTTTTCCTCCTCTTTCCGCTTCCCTCCTTGTCTCTTTTT
TCCTTCCCCCTCTTCTCTTTTTCTCTCCCCCTTTTTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_k11.b1 MSMg01no385_k11.b1 CHROMAT_FILE:
MSMg01no385_k11.b1 PHD_FILE: MSMg01no385_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:17 2005
         (576 letters)



>mm_chr19_38462647_38463622
          Length = 976

 Score = 1079 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctgttcagcttaggtaaaatgcatcttgatattccagagaagtttccatgttc 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctgttcagtttaggtaaaatgcatcttgatattccagagaagtttccatgttc 266

                                                                       
Query: 67  tgctaagagccagttattgcatctcatttactaacaactccgcagagtagtcagaggtgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgctaagagccagttattgcatctcatttactaacaactccgcagagtagtcagaggtgg 326

                                                                       
Query: 127 ataataccatctccattaactgaaggaggtaattgagtcttcaagggtgcttagataggc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ataataccatctccattaactgaaggaggtaattgagtcttcaagggtgcttagataggc 386

                                                                       
Query: 187 gaggccatgccttcaggccataactaggattctctcaatactgaacctcaagtccagtat 246
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaggccatgccttcaggccagaactaggattctctcaatactgaacctcaagtccagtat 446

                                                                       
Query: 247 tatttctgctgtaactggtaagtgcctacatgtataaagtctaacttcactccctcgttt 306
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 447 tatttctgctgtaactggtaagtgcctacatgtataaagtctaacttcactccctcattt 506

                                                                       
Query: 307 ggtaacttggttgcctcctagacctagaacaggttaggcatgttcatccttgtgcagaat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtaacttggttgcctcctagacctagaacaggttaggcatgttcatccttgtgcagaat 566

                                                                       
Query: 367 ctaggcaagcatttaaagcaagcaaagagatggggaaaagaagctaaacataaaaagtac 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctaggcaagcatttaaagcaagcaaagagatggggaaaagaagctaaacataaaaagtac 626

                                                                       
Query: 427 tttagcaaatccagaaagcaaatgatataaacctttagctttactgggctgtgtcaggtt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttagcaaatccagaaagcaaatgatataaacctttagctttactgggctgtgtcaggtt 686

                                                                       
Query: 487 atttgaattttctatctggccaaattaagaatggaattacaggaggcagggagagaagag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atttgaattttctatctggccaaattaagaatggaattacaggaggcagggagagaagag 746

                                         
Query: 547 agggggtcggggagatattgaattttggag 576
           ||||||||||||||||||||||||||||||
Sbjct: 747 agggggtcggggagatattgaattttggag 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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