Query= MSMg01no385_l18.b1 MSMg01no385_l18.b1 CHROMAT_FILE:
MSMg01no385_l18.b1 PHD_FILE: MSMg01no385_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:23 2005
(557 letters)
>mm_chr19_26227387_26228343
Length = 957
Score = 984 bits (509), Expect = 0.0
Identities = 538/553 (97%), Gaps = 9/553 (1%)
Strand = Plus / Minus
Query: 5 gaattccaggattgccagggctacacagagaaaccctgtctcaaaagaccaaccaaacaa 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaattccaggacagccagggctacacagagaaaccctgtctcaaaagaccaacca----- 772
Query: 65 caacaacaacaacaacaaatgaaccaaacacataggaaaatggatttaatcagtcactga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ----aacaacaacaacaaatgaaccaaacacataggaaaatggatttaatcagtcactga 716
Query: 125 caaaagtgaatcataataataataataagtgacacaaccaaattggtaaagatgccaaga 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 715 caaaagtgaatcataataataataataagtaacacaaccaaattggtaaagatgccaaga 656
Query: 185 aattaaaattctcatatactattcagggaatacaacatctgttaactttgtcatacctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aattaaaattctcatatactattcagggaatacaacatctgttaactttgtcatacctat 596
Query: 245 taaagcagagcaactgtataagctccgccttgatagtcccctctatgaagagacctacca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 taaagcagagcaactgtataagctccgccttgatagtcccctctatgaagagacctacca 536
Query: 305 atacctgttcacatctccactgaaacttgtcaaaatttccctgtcagcattatttcccct 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 535 atacctgttcacatctccaccgaaacttgtcaaaatttccctgtcagcattattttccct 476
Query: 365 ggaagtaaaataacccaaattccaatcgataataaaatggatctttttgataaaactatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggaagtaaaataacccaaattccaatcgataataaaatggatctttttgataaaactatg 416
Query: 425 cagtaaatactttactgttataataatgcatttttagactaaataaatatttataacatt 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagtaaataccttactgttataataatgcatttttagactaaataaatatttataacatt 356
Query: 485 taccaaaaaataatgttgagtttcaaaagaaacatacacaacagtcaggctatgggaata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taccaaaaaataatgttgagtttcaaaagaaacatacacaacagtcaggctatgggaata 296
Query: 545 ttatttataccat 557
|||||||||||||
Sbjct: 295 ttatttataccat 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_l18.g1 MSMg01no385_l18.g1 CHROMAT_FILE:
MSMg01no385_l18.g1 PHD_FILE: MSMg01no385_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:23 2005
(509 letters)
>mm_chr19_26077845_26078752
Length = 908
Score = 907 bits (469), Expect = 0.0
Identities = 501/515 (97%), Gaps = 7/515 (1%)
Strand = Plus / Plus
Query: 1 tatatgcattattgcaactggatttaattatttttgtattttaaatttattttccataag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatatgcattattgcaactggatttaattatttttgtattttaaatttattttccataag 254
Query: 61 atcaaaacacaaagaccaaaactactttcttgtcacagtaatcacattttcatttatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atcaaaacacaaagaccaaaactactttcttgtcacagtaatcacattttcatttatgga 314
Query: 121 cactcatcctagcagaattctttcttcta------ttattttttaaagattttatttatt 174
||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct: 315 cactcatcctagcagaattctttcttctattctttttttttttttaagattttatttatt 374
Query: 175 tatttatattatatattggatgagaacatatatactgatgtagttgtcttcagacacccc 234
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tatttatattatatatagaatgagaacatatatactgatgtagttgtcttcagacacccc 434
Query: 235 agaagagggcatcagatcccattacagatggttgtgagccaccatgtggttgttgggaat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agaagagggcatcagatcccattacagatggttgtgagccaccatgtggttgttgggaat 494
Query: 295 tgaactcaggacctttggaagagcagtcagtgctcttaaccgctgagccatctctccagc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgaactcaggacctttggaagagcagtcagtgctcttaaccgctgagccatctctccagc 554
Query: 355 cctctttcttctattcttttgtacctagaattatttgtgtaaagtgtcaggtttaaagaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cctctttcttctattcttttgtacctagaattatttgtgtaaagtgtcaggtttaaagaa 614
Query: 415 ggcttcttggccttttataaccaggcatgtaaactaaaaatcccctttaaataaacaaga 474
||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct: 615 ggcttcttggccttttataaccaggtatgtaaactaaaaatcccccttacataaacaaga 674
Query: 475 accattggtgttataaacatttaaaaaaatcaact 509
|||||||||||||||||||||||||||| ||||||
Sbjct: 675 accattggtgttataaacatttaaaaaa-tcaact 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space: 448102
Effective search space used: 448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
