BAC Information

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BAC

Clone NameMSMg01-386F03
Chromosome19 (Build37)
Map Location 55,104,460 - 55,296,235
singlet/doubletdoublet
Overlap geneGpam, Tectb, Gucy2g
Upstream geneShoc2, Adra2a, LOC100043004
Downstream geneAcsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386F03.T7 (MSMg01no386_f03.b1)MSMg01-386F03.TJ (MSMg01no386_f03.g1)
ACCAG489315AG489316
length719735
length of high quality
(start - end)		560 (45 - 604)363 (79 - 441)
definitionCHROMAT_FILE: MSMg01no386_f03.b1 PHD_FILE: MSMg01no386_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:06 2005CHROMAT_FILE: MSMg01no386_f03.g1 PHD_FILE: MSMg01no386_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,104,460 - 55,104,999)(55,295,873 - 55,296,235)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTGTTTACTACTGTTTCTTGATGTTCTCAGACTCTGGCTATGTG
AGAGCCAGAACAAATTTTCAGAACAAAAGAATGATGAATTGGGCCATGGA
TATGCTAATCAGCCAGAGTCTCCCTATAATACATACAGAGAGAGATGAAT
CCACCACTTGTAACTCTCAATTATTTGTCAGTGAATAAATTTGAAAGAAG
AAATAGCAATACCCACCTTCCCATGGCCTAAGCTACACACCTACAGGTTC
CTCCTAGTTCTCACTCTCTGACATCCCAGTTCTTGGACCTCCATGGGAAG
TCCTTCATCTCACAGCATGTCTCCAGAATGGCCCTGCTGCTCTGATCACT
GAAGGGAGTCTCAAAGTGGAAAGTAAGAATTAGATTCTTGAAACATTCCC
ATCAGGGAGCAGGTTGCTTGGTGTAGTTGCAACCTGGCTTTGCAGGGGAC
AGGGGGAAGGCGTGGCTCCCAGCTTATGAAGAAGTATGCAGTAGGCAGGA
AGATGTGCGCTTTGTCCGTGTTCCTCTTTGTAGTGAGGGGATGTGCTCCC
AACACCAGTCTCAACTACAGAGGAACCAGTAACACAGACTGATCTGAATA
AGGAGTCCCAGCAGATCAATCACACATACTCTGTCTCAGCCCAATGCAAG
ATCCTCAAACTATGCCTTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAACAGGATACAAGGCACA
CATGCTACTCTTGTTTTGCTGATGGGAGACAGAGCACTTACATAGTTTGC
CTCAAGTCTCATAGCTACGGAATAGAGCCAATAGGATTCAAGTCCAGGCA
TGTCCCACACCACATTATGTAGCATGAAGGACTAGAGATTTCCGCTATGT
TTCATAACAGGGACGAGCCAATCTCCTAAGTAGGTGCCCATCAGGGTATG
GCAGGGAATACTCAGAGGAGGGTATATAGAGAGATCCAGCTCTGCCATGA
AGGCAGGGAGTATGCAGGGTGTGGGTGGCTAGATACAAAAGCCCAAGATG
ACTCACTGTAGGTATACAGATGGTGGGGAGGGATGGGGAAGGCTCTCTTT
TTCTTCTCTCGCTCTCTTTTTTTCCTGCCTTCCTCTTCTGTTCTTCGTTC
CGCCTCTTTTCTTCTTCTTTTTCTTTTCCTGCCCGCCTTTCCCGCCTTTT
CCTTCCTTTTTCTATGCCCGTTCGTCCCTTCCCTCTCTCTTTTCTCGTCT
CTTCTCCCCCTCCTTTCCCTTTCCTTTCTTTCCGGGGCCCCGTTATTTCC
CCTTTTCCCCGCGCTTTTCCGTCTTGGTCATTCCCCTTTGCCGTACCTTT
TGCACCTGCTTTTCTGTCTCCTTCGTTTCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_f03.b1 MSMg01no386_f03.b1 CHROMAT_FILE:
MSMg01no386_f03.b1 PHD_FILE: MSMg01no386_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:06 2005
         (560 letters)



>mm_chr19_55104240_55105199
          Length = 960

 Score = 1036 bits (536), Expect = 0.0
 Identities = 539/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  tactgtttcttgatgttctcagactctggctatgtgagagccagaacaaattttcagaac 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tactgtttcttgatgttctcagactctggctatgtgagagccagaacaaattttcagaac 280

                                                                       
Query: 81  aaaagaatgatgaattgggccatggatatgctaatcagccagagtctccctataatacat 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaaagaatgatgaattgggccatggatatgctaatcagccagagtctccctataatacat 340

                                                                       
Query: 141 acagagagagatgaatccaccacttgtaactctcaattatttgtcagtgaataaatttga 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acagagagagatgaatccaccacttgtaactctcaattatttgtcagtgaataaatttga 400

                                                                       
Query: 201 aagaagaaatagcaatacccaccttcccatggcctaagctacacacctacaggttcctcc 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 401 aagaagaaatagcaatacccaccttcccatggcctaagctacacacctacaggctcctcc 460

                                                                       
Query: 261 tagttctcactctctgacatcccagttcttggacctccatgggaagtccttcatctcaca 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tagttctcactctctgacatcccagttcttggacctccatgggaagtccttcatctcaca 520

                                                                       
Query: 321 gcatgtctccagaatggccctgctgctctgatcactgaagggagtctcaaagtggaaagt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gcatgtctccagaatggccctgctgctctgatcactgaagggagtctcaaagtggaaagt 580

                                                                       
Query: 381 aagaattagattcttgaaacattcccatcagggagcaggttgcttggtgtagttgcaacc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagaattagattcttgaaacattcccatcagggagcaggttgcttggtgtagttgcaacc 640

                                                                       
Query: 441 tggctttgcaggggacagggggaaggcgtggctcccagcttatgaagaagtatgcagtag 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tggctttgcaggggacagggggaaggcgtggctcccagcttatgaagaagtatgcagtag 700

                                                                       
Query: 501 gcaggaagatgtgcgctttgtccgtgttcctctttgtagtgaggggatgtgctcccaaca 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gcaggaagatgtgcgctttgtccgtgttcctctttgtagtgaggggatgtgctcccaaca 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_f03.g1 MSMg01no386_f03.g1 CHROMAT_FILE:
MSMg01no386_f03.g1 PHD_FILE: MSMg01no386_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:06 2005
         (363 letters)



>mm_chr19_55295539_55296301
          Length = 763

 Score =  656 bits (339), Expect = 0.0
 Identities = 357/363 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacaacaggatacaaggcacacatgctactcttgttttgctgatgggagacagagcact 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 697 ttacaacaggatacaaggcacacatgctactcttgttttgcagatgggagacagagcact 638

                                                                       
Query: 61  tacatagtttgcctcaagtctcatagctacggaatagagccaataggattcaagtccagg 120
            | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 catatagcttgcctcaagtctcatagctacggaatagagccaataggattcaagtccagg 578

                                                                       
Query: 121 catgtcccacaccacattatgtagcatgaaggactagagatttccgctatgtttcataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catgtcccacaccacattatgtagcatgaaggactagagatttccgctatgtttcataac 518

                                                                       
Query: 181 agggacgagccaatctcctaagtaggtgcccatcagggtatggcagggaatactcagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agggacgagccaatctcctaagtaggtgcccatcagggtatggcagggaatactcagagg 458

                                                                       
Query: 241 agggtatatagagagatccagctctgccatgaaggcagggagtatgcagggtgtgggtgg 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agggtagagagagagatccagctctgccatgaaggcagggagtatgcagggtgtgggtgg 398

                                                                       
Query: 301 ctagatacaaaagcccaagatgactcactgtaggtatacagatggtggggagggatgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctagatacaaaagcccaagatgactcactgtaggtatacagatggtggggagggatgggg 338

              
Query: 361 aag 363
           |||
Sbjct: 337 aag 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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