BAC Information

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BAC

Clone NameMSMg01-386K13
Chromosome19 (Build37)
Map Location 3,138,964 - 3,139,274
singlet/doubletsinglet
Overlap geneLOC630980
Upstream genenone
Downstream geneLOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386K13.T7 (MSMg01no386_k13.b1)MSMg01-386K13.TJ (MSMg01no386_k13.g1)
ACCAG489575AG489576
length744745
length of high quality
(start - end)
585 (76 - 660)657 (71 - 727)
definitionCHROMAT_FILE: MSMg01no386_k13.b1 PHD_FILE: MSMg01no386_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:30 2005CHROMAT_FILE: MSMg01no386_k13.g1 PHD_FILE: MSMg01no386_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:31 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAAACTTGCCAAGAAATGAATTTCAGATCTACCTGAATAGGGC
AATGCAAGGCTACCCACTGCTCCACTTTATCCAGAATGTCAAAAATAGAG
TAGACTCCTTAACACTTCCACCCACTGTTATTTAGTGTACATCCAGTGCT
GCTTCAGGCACTGACTGTGAGCAAAAGACCCACAAACTGCTCACTGCCTC
CAATTCTGACCTAATGTCAGAGATAGCGTCAATGTCAGCAGAATGTCAGC
AGAAGCCTGACAACGGGGCCTGTTTTGTCTGCAGTTGAGATCCAACTAAA
ATAACATCTCACCCATAGCGGGGCTCGAACCTACAACCCTGAGATTAAGA
GTCTCATGCTCTACAGACTGAGCTAGCTGGGCAACTGCTCTCTATCTTAG
AAGTTTATGAATTGTGACCTGAATGTATTTACCTGGCAAAGTAAATGAAG
CCATTTCAGATTGAGGGCAGCTTCTAAAACAAGAAGTTTCACCTCCACAC
AGCAGACACATGCCCGAACACTGATCTACACACATAAAGGCTGAACTGCC
TGCTCATTCTCCTTCTCCTATTCCCACCCAAAAGTGGAAACTCTAATCCC
TGCCCCCTAACCACTGGGTAAGCATCACCATAGCCAGAACTTGGCTACCA
CTTGCTCTGTTCGCATATCATAGAAGTGCAATGCAGACAGGCCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGCCCTGCCTTAACCACTTGTTGACATG
TGAAAAGGAACAAAAAGGTTTCTAACACTGGAGAAAGTTCAAGGCCAGAC
ATACCTCGTAAAGCTGTTATGTGTCCTGCAGTTCTGGTTCCGCCTCGCGA
ACGAGGGATCTCCCTTGTGCTGGTGTGATGGTAGTTCTCGGGTTTCTCGG
TGCCACTTATTGCCCGAGCTTTTGTCCCCGCTAGCAAGAACCCACTCAGG
ACAACCGGAATCTTCTGCGTTTAAAGGCTTTATTGCTTACTTCTCAGGAG
GAAGACCCTGAACCGGGAAAATGTCGCTGCTTATATAGCCCGCAGCATGA
CGTTTCAGCACCTGATGTGGCGTGACAGCTCCTGATTCGTTGCTCGCCCA
TCACCCCATTACTACGCTGCGAGATGGGCAGTGACTAGGCGTGAGTTCAC
TCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCGTAGTGGAAGCC
AGCGCCATCTTATGATGGTGATTGCTCACTGCACATACGTGATTGCTCGC
GGCACGGCTCTCCACAAAGACTCTCAACCTCTTTGGAAACTATAGGATTT
TGTTGAGACTGTGAACATTTAACAAATGTCATGAGAAAGAGAAACTGTTT
TACTTACCAGAGACACAGAGGAGAAGAAGGCTGAGGAGAGGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_k13.g1 MSMg01no386_k13.g1 CHROMAT_FILE:
MSMg01no386_k13.g1 PHD_FILE: MSMg01no386_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:31 2005
         (657 letters)



>mm_chr19_3138218_3139274
          Length = 1057

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                        
Query: 347  gtggcgtgacagctcctgattcgttgctcgcccatcaccccattactacgctgcgagatg 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gtggcgtgacagctcctgattcgttgctcgcccatcaccccattactacgctgcgagatg 998

                                                                        
Query: 407  ggcagtgactaggcgtgagttcactcttgcacttgcgcataaggcttgtttactagttag 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  ggcagtgactaggcgtgagttcactcttgcacttgcgcataaggcttgtttactagttag 938

                                                                        
Query: 467  gcgtagtggaagccagcgccatcttatgatggtgattgctcactgcacatacgtgattgc 526
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 937  gcgtagtggaagccagcgccatcttatgatggtgattgctcactgcacatacttgattgc 878

                                                                        
Query: 527  tcgcggcacggctctccacaaagactctcaacctctttggaaactataggattttgttga 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  tcgcggcacggctctccacaaagactctcaacctctttggaaactataggattttgttga 818

                                                                        
Query: 587  gactgtgaacatttaacaaatgtcatgagaaagagaaactgttttacttaccagagacac 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  gactgtgaacatttaacaaatgtcatgagaaagagaaactgttttacttaccagagacac 758

                       
Query: 647  agaggagaaga 657
            |||||||||||
Sbjct: 757  agaggagaaga 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)