BAC Information

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BAC

Clone NameMSMg01-387H18
Chromosome19 (Build37)
Map Location 15,980,315 - 15,980,587
singlet/doubletsinglet
Overlap genePsat1
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream geneLOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387H18.T7 (MSMg01no387_h18.b1)MSMg01-387H18.TJ (MSMg01no387_h18.g1)
ACCAG490206AG490207
length780807
length of high quality
(start - end)		449 (47 - 495)355 (81 - 435)
definitionCHROMAT_FILE: MSMg01no387_h18.b1 PHD_FILE: MSMg01no387_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:33 2005CHROMAT_FILE: MSMg01no387_h18.g1 PHD_FILE: MSMg01no387_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTAGAAGATCCACAGAAAAGCTTTCAAAATGTTACCAGGTTCA
GCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGG
CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGCGAGAGTTC
CAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCAAATGTTACCAGGT
CACTTGAGAATGAAGGTGGCCATTAGCTGGGAGTTTCCTCAGCTCTGCAG
GGCCCCAATGTTTAGTCATTATTCTTTGAGAAAGGAATCTGTAATAAGCA
TGTATTTGGAAAATGTCTGTTAAGTTTCTGTAGTCAATCCCAAGTTACTC
TAAATGCTGTGTGCTGCTCACAGGCAGAGCGTTCACATCATGTTCACAGC
TGATGCATCTCCAAAAAATTCTTCATGGAGGCAGCCAGCTTCTCACCGTC
TTCGGTTGTGACAGCGTTATACCGAGAGGCTCAGATGCCTCCCACTGACC
TGTGCCCTTCCTGGAGAACATGTTGAGGTCTACTGCCTGAACAAGAAATC
GCTCCATCCCCCTTGGGGGGCGCTCAGGACAAATGATATGGTTCCTTCGG
CCTCCTATTCCGGCCCTCCCCTCGGGNACTAATTAATTTTCCTCGTACTT
TCTTGCATCGCGACCTTTCTTCCCGTTCTTTCCGCCCCCACCCGTTTCTT
CGTACCCACTTCGTCCCACGCTTCCTCATG

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCCTTAATCTTCTGGTA
CTCATAGCCACTATGCCTTAAGATCTCCATACCAAGATCCAGGCCAGAAA
CTTCTCTCTCCCAGCCTCCAGATTTGAATCACTGGGGAGCCTTCCATTTC
TGGATTGTAGTTCATTCCAGATACAGTCAAGTTGACAACCAGAAATAGCC
ACTACAAACCACATGGTGGCTCATGACCATCTATAAGGGCATCTGATATC
CTCTTATAGCATGCAGGTGTGCATGCAGCAAAGAACCCACGTGAGAGAGA
GATAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAAAGAGAAAGAATGA
GAGGAAGAGGGAGAGGGAGAGGTAGTAAGAGAGAGTTTTNTNTTTTTTNN
TTTTTTTTTTTTGTGNTTTTTTTTTTTTTGTGGTTTTTTTTTTGTGGTGT
TTTCTTGTTTTTTTTTTTTTTTTTGTGTTTTTTGTTTTGTTTTTTTTTTG
TGGGTTCTGTGCTTTGTTTGTTTCTGCTTGCGGCTTCGCCTTTTTTCCTC
GCCCCCCCCTCTCCCCTATCTTTTCTCTCCCTTTTCCTTATTCGTTCACC
CCCTCGCCCTTTTTGCCCGTCTCTTCGTTTCGCACCTAGCTTCGTCAATG
CCTGCCACGATTGCCTCTTGTTACCTTACCTGTCTTTCCCTCACCTCTGT
CTCCTCTTCTATCCCTCACGTGCCGTATGATCCCTTTATTTCCACCTCTC
CTCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_h18.b1 MSMg01no387_h18.b1 CHROMAT_FILE:
MSMg01no387_h18.b1 PHD_FILE: MSMg01no387_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:33 2005
         (449 letters)



>mm_chr19_15979935_15980787
          Length = 853

 Score =  321 bits (166), Expect = 6e-92
 Identities = 242/278 (87%), Gaps = 24/278 (8%)
 Strand = Plus / Plus

                                                                       
Query: 191 aaatg-ttaccaggtcacttgagaatgaaggtggccattagctgggagtttcctcagctc 249
           ||||| || ||||||||| ||||||||||||||||  |||||||||||||||||||||||
Sbjct: 381 aaatgctt-ccaggtcacatgagaatgaaggtggctgttagctgggagtttcctcagctc 439

                                                                       
Query: 250 tgcagggccccaatgtttagtcattattctttgagaaaggaatctgtaataagcatgtat 309
           ||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcagtgccctgatgtttagtcgttattctttgagaaaggaatctgtaataagcatgtat 499

                                                                       
Query: 310 ttgg------aaaat----gtctgttaagtttctgtagtcaatcccaagttactctaaat 359
           ||||      |||||    |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 500 ttgggaaaaaaaaatccatgtctgttaagtttctgtagtcaatcccaagttactctaaac 559

                                                                       
Query: 360 g---ctgtgtgctgctcacaggcagagcgt---tcaca--tcatgttcacagctgatgca 411
           |   ||| ||||||||||||||||||||||   |      ||||||||||||||||||||
Sbjct: 560 gacgctgcgtgctgctcacaggcagagcgtggct----ggtcatgttcacagctgatgca 615

                                                 
Query: 412 tctccaaaaaattcttcatggaggcagccagcttctca 449
           ||||||| |||||||||||| |||| ||||||||||||
Sbjct: 616 tctccaagaaattcttcatgaaggccgccagcttctca 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 853
Length adjustment: 10
Effective length of query: 439
Effective length of database: 843
Effective search space:   370077
Effective search space used:   370077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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