Query= MSMg01no387_p06.b1 MSMg01no387_p06.b1 CHROMAT_FILE:
MSMg01no387_p06.b1 PHD_FILE: MSMg01no387_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:10 2005
(400 letters)
>mm_chr19_27260678_27261479
Length = 802
Score = 665 bits (344), Expect = 0.0
Identities = 384/400 (96%), Gaps = 6/400 (1%)
Strand = Plus / Plus
Query: 5 gaattctaagtcctctctcaccatactgccttggctttatgtgaaagcaagctggattcg 64
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 205 gaattctaagtcctcagtcaccatactgccttggctttatgtgaaagcaagatggcttcc 264
Query: 65 tatcgtaaaatctcgggctttccaaggaaaaggctaaatgtttgagaaaaaa----gacg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 tatcacaaaatctcgggctttccaaggaaaaggctaaatgtttgagaaaaaaaaaagacg 324
Query: 121 tttcatgagtcccaatttatacctaaataatttaatttgtacctcatcttcattattagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcatgagtcccaatttatacctaaataatttaatttgtacctcatcttcattattagt 384
Query: 181 gatcctaagaaatcccagatgtaataaatgaacaaatatgataatcgccagttctcctac 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 gatcctaagaaatcccagatgtaataaatgaacaaatatgataattgccagttctcctac 444
Query: 241 cctgttaaagatacttagttgagatgtttgaaaggcagcttttccttaactgcccagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgttaaagatacttagttgagatgtttgaaaggcagcttttccttaactgcccagcat 504
Query: 301 ctcctggtatttgtgttttgtttgttaaagtataataaagaatctgttcagatcactcaa 360
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcctggtgtttgtgtt--gtttgttaaagtataataaagaatctgttcagatcactcaa 562
Query: 361 atgcagagtcaaggtggctcattgtgctgttcggataatt 400
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 atgcagagtcaaggtggctcattgtgctgttcagataatt 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 802
Length adjustment: 9
Effective length of query: 391
Effective length of database: 793
Effective search space: 310063
Effective search space used: 310063
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no387_p06.g1 MSMg01no387_p06.g1 CHROMAT_FILE:
MSMg01no387_p06.g1 PHD_FILE: MSMg01no387_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:10 2005
(282 letters)
>mm_chr19_27426698_27427379
Length = 682
Score = 470 bits (243), Expect = e-137
Identities = 273/283 (96%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 1 gtgcacacaggcatgggtactcttaggtgatgagatggctaaaaaaattctttcatttat 60
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 482 gtgcacacaggcatgggtactcttaggtgaggagatggctaaagaaattctttcatttat 423
Query: 61 ggaattgggcttcgaaattatgaatagactacagtaaatgcctttataaatgtctaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggaattgggcttcgaaattatgaatagactacagtaaatgcctttataaatgtctaggtc 363
Query: 121 taagcagacagttaccaact-catggaaggcattcataatgtgactgactgtgatgggtt 179
|||||||||| |||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taagcagacaattactaa-tgcatggaaggcattcataatgtgactgactgtgatgggtt 304
Query: 180 cagtctttggctagtacaaagtccatacacacaaccggagttgaaagcagagagaggttt 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagtctttggctagtacaaagcccatacacacaaccggagttgaaagcagagagaggttt 244
Query: 240 gttacttgcaacaaccaagaatagttctggtataaggctctcc 282
||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 243 gttacttgcaacaaccaagaagagttctggggtaaggctctcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
