BAC Information

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BAC

Clone NameMSMg01-388E21
Chromosome19 (Build37)
Map Location 5,650,907 - 5,651,305
singlet/doubletsinglet
Overlap geneSipa1
Upstream geneGm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela
Downstream genePcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388E21.T7 (MSMg01no388_e21.b1)MSMg01-388E21.TJ (MSMg01no388_e21.g1)
ACCAG490832AG490833
length758763
length of high quality
(start - end)		408 (64 - 471)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no388_e21.b1 PHD_FILE: MSMg01no388_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:37 2005CHROMAT_FILE: MSMg01no388_e21.g1 PHD_FILE: MSMg01no388_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TACTGCATCGCCAGAGCCCACCCCTGGTTGTCCTGCTCTGCAGGCTCGAA
GTGTTCCCTCTCCTGCTCCAAACAGACAGGCATGAAGCATGGCCACCTGC
TTTCCAAGAGAACCCAATAAATGAAGGGGAGCCAAGGGGTGTTCTATCCT
CAGAGCCCCCACCCTCTGCTTGGTGCCAGATTAACACTAAGTCAATGTCC
CCCCTGGGACCTGTCCTACTGCTCCTAGGAGCTTGATATGACCTTGGAAA
GGGGGATGACTCCCCCTCCTCTGTATCTTGAACACACAAACACAAATAGT
TGTTTGCTTCTTCTTGTTGTTTCTTTTTTTTTTTTAAACTCTGATGTCTC
CTTTTCTTTACAGGATATTTACAAACAGGGACAGGCATTAGCCACCAAAT
GGGCTGGGAAGAGGGGGCAGTGCTAAGACGCGCCTCAGCGCAGGGAAGAA
GTCCTGAGGAAGGCCACTAGTATGACCCAGTTGCTCTGAGGCGCCAGGCC
GTTCCAAGCAGGCCCAGATTCAGATTGCAACCCGGCCCGCCCCATAGGGG
CTGCCCCCCCAGCCTAAAAGCCAGCAACACGTGCCGGGGGTTACTCTCCG
GATTTGCCCCATCCCCCTGGTTGCTGCCGTCGAACCCCTCACCCTCCCCC
CCCACCCGCCCCTGCCCCCCCTCCTCCACGTTCTACAACGGACCCCAACC
CTTCCCCG

NNNCCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTG
AACTCAGAAATCCACCTGCCTCTGCCTCCGGAGTGTTGGGATTAAAGCTG
CAACAAGTGTTCTTAATTGCTGAGCCCACATTCCAGCCCTCTTTTTTTCT
TTTTTTTTTTTTTTTTTTTGGTTTTCGAGACAGGGTTTCTCTGTACAGTT
CTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGA
AATCCACCTGCCTCTGTCCTCCTTGTGCTGGGATTAAAGGCGTGTGCCAC
CACTGCCCGGCTCCAGCCCTCTTTTTAAATTTATTTATTTTCTTTTTTCA
TTTCTTATGCACCCCCCCCCACTTTTTTTATGGTTTGTTTGTTTGTTCCC
GTCTCCGGTTTTCTTCTCCCCTCTCCCTCCCTCCTTGCCCCTCTTCCCCC
CTCCTCTTTCCTTCTTTTTTTTTCCCTCTCCCTTTTCCTCCTCTTTTCCT
TTTCTCCCCCACTCCTCCCCTTCTCTCCTCCTTCTGTCCTCCTTTCCCCT
TTTCTTTCTTCCTCTTCTTCCTACTTCTCCCTCCTCTCCCCATCCCTTTT
TTTTTTTTTCCTCCGCCCCCACCCCTTTACTTCTTCTTTTTCTTCTTTCT
TTCCCACCTTCCCCTTTTTCCCTCCCCTCCTTCTACCCTTATCTTTCCCT
TTTTCTTTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_e21.b1 MSMg01no388_e21.b1 CHROMAT_FILE:
MSMg01no388_e21.b1 PHD_FILE: MSMg01no388_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:37 2005
         (408 letters)



>mm_chr19_5650707_5651514
          Length = 808

 Score =  723 bits (374), Expect = 0.0
 Identities = 396/410 (96%), Gaps = 13/410 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcccacccctggttgtcctgctctgcaggctcgaagtgttccctctcctgctccaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcccacccctggttgtcctgctctgcaggctcgaagtgttccctctcctgctccaaac 260

                                                                       
Query: 61  agacaggcatgaagcatggccacctgctttccaagagaacccaataaatgaaggggagcc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacaggcatgaagcgtggccacctgctttccaagagaacccaataaatgaaggggagcc 320

                                                                       
Query: 121 aaggggtgttctatcctcagagcccccaccctctgcttggtgccagattaacactaagtc 180
           ||||||||||||||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 321 aaggggtgttctatcctcagagcc-------tctgcttggtgccagattaacactaagtc 373

                                                                       
Query: 181 aatgtcccccctgggacctgtcctactgctcctaggagcttgatatgaccttggaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aatgtcccccctgggacctgtcctactgctcctaggagcttgatatgaccttggaaaggg 433

                                                                       
Query: 241 ggatgactccccctcctctgtatcttgaacacacaaacacaaatag--ttgtttgcttct 298
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 434 ggatgactccccctcctctgtatcttgaacacacaaacacaaatagagttgtttgcttct 493

                                                                       
Query: 299 tcttgttgtttcttttttttttttaaactctgatgtctccttttctttacaggatattta 358
           ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcttgttgtttctttttttt----aaactctgatgtctccttttctttacaggatattta 549

                                                             
Query: 359 caaacagggacaggcattagccaccaaatgggctgggaagagggggcagt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 caaacagggacaggcattagccaccaaatgggctgggaagagggggcagt 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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