BAC Information

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BAC

Clone NameMSMg01-388G17
Chromosome19 (Build37)
Map Location 14,388,561 - 14,388,914
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225, EG635497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388G17.T7 (MSMg01no388_g17.b1)MSMg01-388G17.TJ (MSMg01no388_g17.g1)
ACCAG490920AG490921
length773760
length of high quality
(start - end)
497 (37 - 533)505 (77 - 581)
definitionCHROMAT_FILE: MSMg01no388_g17.b1 PHD_FILE: MSMg01no388_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:45 2005CHROMAT_FILE: MSMg01no388_g17.g1 PHD_FILE: MSMg01no388_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCC
AATTTTCCCAGACCTGCCTGTTCGCTCATTCGCTGAGAGTTATTGGTTAC
CTCTGTGATCAGGGACTGTCCCTCCGTCCCTGGTCCAAGTGTTGGAGTGG
GATGTTTTCCTTTCCGCTTTCAGTTTCTCTGTGCAGTATTGCCTCTTACT
CCTGTTTCTTTCTCTCCCTCTGCCTGGTCTACCTTACTAAGGTACCATTT
CATTTCTTCTTTAGTTATGTTTTGTTTTTCCTTACTCTGACATATGTATA
ATATGTTGTTTTCTTGCAGTGTGCTTTACTTCCATTTAGGATGCTTAGGG
GGATGTATTTGGGCACGTTTGTGTCTGGAAAATGCACTATTCTAAGTGTT
CATTAGTGATGGTGACTATCTGTCAACTTACAGAAATTTTTCAAACTTCC
ACTGTTTTCTTATGATCCAGAGTCTTAACTCAAATGATGTTGATGGAGGT
GTCCTGGCCTGTTCACCAGAACCCGTGCATTCCAAGTTTCCATATGAGGG
AGGGTAAGCTGCAAGCACAGTAAGATCATTCCAGGAAAGAAAAAGTTCTC
TAGAAAGTTTACCAATATCATCTAGGAAAATATCCAGGAAATTGCTGAGA
AAACCAATTTACCCCGCATCTAATACCAACTTAGGGCCCTGAAAAATACC
TTTCCCTGGGCCTGGCCTCCAAAATTTTACAAAAGATATTTGTACTTTAA
CCCCTCTTTTTTTTCCCCCACGA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTT
TTAATAGGATTATTTGATTTTTTAGAGTCCATCTTCTTGAGTTCTTTGTA
TATATTGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTT
CTCACTCTGTTGGTGGCCATTTTGTCTTATTGACAGTGTCTTTTGCCTTA
CAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTTGATTCTTTTTTTTTT
TTTTTTTTTCTTTTTATATTTTTTTTTTCTGTGTAGCCCTGGCTGTCCTG
GAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCAGTCTGCC
TCTGCCTCCCCAGTGCTCGGATTAAAGGCGTGTGCCACCACTGCCTAGAT
CCATTTGTCAATCCTTGATCTTACAGCACAAGCCATTGCTGCTCTGTTCA
GAAATTTTTTCCCCTGTGCCAATATCTTCTAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGACTCTGGTTTTCTGTGGAGAGCCTTGACACACT
TAGACTTGAGTTTTGTATGAGGAGATTAAGAATGGATCAATTCGGATTCT
TCTTTATGATAACTGCCAGTTGTGCCAGCACCTTTTGTTTGAAATGCTGC
CTTTTTTCCCCTGGACGGTTTTAAGTTCTCTTTCCGAAAAAAACCACCCT
ATTTTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_g17.b1 MSMg01no388_g17.b1 CHROMAT_FILE:
MSMg01no388_g17.b1 PHD_FILE: MSMg01no388_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:45 2005
         (497 letters)



>mm_chr19_14388358_14389254
          Length = 897

 Score =  669 bits (346), Expect = 0.0
 Identities = 352/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcccaattttcccagacctgcctgttcgctcattcgctgagagttattggtta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggaattctcccaattttcccagacctgcctgttcgctcattcgctgagagttattggtta 498

                                                                       
Query: 64  cctctgtgatcagggactgtccctccgtccctggtccaagtgttggagtgggatgttttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cctctgtgatcagggactgtccctccgtccctggtccaagtgttggagtgggatgttttc 438

                                                                       
Query: 124 ctttccgctttcagtttctctgtgcagtattgcctcttactcctgtttctttctctccct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctttccgctttcagtttctctgtgcagtattgcctcttactcctgtttctttctctccct 378

                                                                       
Query: 184 ctgcctggtctaccttactaaggtaccatttcatttcttctttagttatgttttgttttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgcctggtctaccttactaaggtaccatttcatttcttctttagttatgttttgttttt 318

                                                                       
Query: 244 ccttactctgacatatgtataatatgttgttttcttgcagtgtgctttacttccatttag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccttactctgacatatgtataatatgttgttttcttgcagtgtgctttacttccatttag 258

                                                                 
Query: 304 gatgcttagggggatgtatttgggcacgtttgtgtctggaaaatgcactattct 357
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 257 gatgcttagggggatgtatttgggcatgtttgtgcctggaaaatgcactattct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)