Query= MSMg01no388_h19.b1 MSMg01no388_h19.b1 CHROMAT_FILE:
MSMg01no388_h19.b1 PHD_FILE: MSMg01no388_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:50 2005
(510 letters)
>mm_chr19_17116824_17117727
Length = 904
Score = 872 bits (451), Expect = 0.0
Identities = 494/513 (96%), Gaps = 9/513 (1%)
Strand = Plus / Minus
Query: 1 aaagtcccaaaagtccttcatcttcctccaaaaacagcagtcgggtctataatagcaaca 60
||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 880 aaagtcccaaaagtctttcaccttcctccaaaaacagcagtcgggtctataacagcaaca 821
Query: 61 gcccactctttggtaccaaattctgtcttagttacttttctattgccatgataagacacc 120
|||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 820 gcccactctttggtactaacttctgtcttagttacttttctattgccgtgataagacacc 761
Query: 121 actaccaacaaaacttaaaaccaatgacaaagtcctccatcaaggcacttcctaatcctt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 760 actaccaacaaaacttaaaaccaatgacaaagtcctccaacaaggcacttcctaatcctt 701
Query: 181 cctgaacagtttcaccatctggggatcaagtattcaaatatatgagcctattgggggaca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cctgaacagtttcaccatctggggatcaagtattcaaatatatgagcctattgggggacg 641
Query: 241 atctcattcaaacgacaac---tgtattcttcctttccttaataaatctatttgatcatt 297
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 640 atctcattcaaacgacaacaactgtattcttccttcccttaataaatctatttgatcatt 581
Query: 298 gacattaagactgttcattgatgtgcaatcaatctctagagcatctttgtcttataagac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gacattaagactgttcattgatgtgcaatcaatctctagagcatctttgtcttataagac 521
Query: 358 tgacataacactaccctactgtatgtgtgtgtgtgtacatatatacatatagatgtagat 417
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgacataacactacccta------gtgtgtgtgtgtacatatatacatatagatgtagat 467
Query: 418 atatgcatatacatacaccacatcatgtttattctttcatctattcatagcttcttgggt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atatgcatatacatacaccacatcatgtttattctttcatctattcatagcttcttgggt 407
Query: 478 tgcttccgatttaaattgtgctgttataaacac 510
||||||||||||||||| |||||||||||||||
Sbjct: 406 tgcttccgatttaaattatgctgttataaacac 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 904
Length adjustment: 10
Effective length of query: 500
Effective length of database: 894
Effective search space: 447000
Effective search space used: 447000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_h19.g1 MSMg01no388_h19.g1 CHROMAT_FILE:
MSMg01no388_h19.g1 PHD_FILE: MSMg01no388_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:50 2005
(462 letters)
>mm_chr19_16970565_16971426
Length = 862
Score = 832 bits (430), Expect = 0.0
Identities = 454/462 (98%)
Strand = Plus / Plus
Query: 1 aatgtgtcagcgttcactatgtgtgtgtttagggttacaatgtcttcccagttaattgtt 60
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aatgtgtcagcgttcgctatgtgtgtgtttagggttataatgtcttcccagttaattgtt 260
Query: 61 ctataattagagtgaagccgccgtcttctgatttgctttcttttgaagttcatttgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctataattagagtgaagccgccgtcttctgatttgctttcttttgaagttcatttgtcag 320
Query: 121 atactaggctgacacctgcttacttctttgtcccgtttgtttggaatacctttccccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactaggctgacacctgcttacttctttgtcccgtttgtttggaatacctttccccatc 380
Query: 181 ttctttgaaggtaaaatgtgttgcttgaagacaacagaaagatggaccttgtttcttaat 240
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 381 ttctttgaaggtaaaatgtgttgcttgaagacaacagaaagatggattttatttcttaat 440
Query: 241 ccattctctaagctgtgcctttttgttcaggaccagagaccaggcgtatttaaagctggc 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ccattctctaagctgtgcctttttgttcaggaccagagaccaggcatatttaaagctggc 500
Query: 301 cattgactgttgctagtttggtttttgctacttgtgttcttagttctgttttgtgtttca 360
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 cattgactgctgctagtttggtttttgctactcgtgttcttagttctgttttgtgtttca 560
Query: 361 gtgattattgattctctcctcctcttgtttctcgatttaaagactatttccggtatgctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgattattgattctctcctcctcttgtttctcgatttaaagactatttccggtatgctc 620
Query: 421 tgcagagctggtttggtggacaaaaatccttttagcctgttt 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcagagctggtttggtggacaaaaatccttttagcctgttt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
