BAC Information

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BAC

Clone NameMSMg01-388J04
Chromosome19 (Build37)
Map Location 14,126,236 - 14,126,838
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388J04.T7 (MSMg01no388_j04.b1)MSMg01-388J04.TJ (MSMg01no388_j04.g1)
ACCAG491037AG491038
length760755
length of high quality
(start - end)
602 (30 - 631)604 (65 - 668)
definitionCHROMAT_FILE: MSMg01no388_j04.b1 PHD_FILE: MSMg01no388_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:56 2005CHROMAT_FILE: MSMg01no388_j04.g1 PHD_FILE: MSMg01no388_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACTAA
ATGATTACGATTAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGT
CTACAGAGTGAGTTCCAGAACAGCCAGGGGTATACGGAGAAACCCTGCAC
CTAAGTCAGATGTAGGCTCTTAGCTACTGCTCCAGAGCCATGCTCGATGG
CTTGTCACCATGCTATCTGCCATCATTCTCATGAACTCACTCTTTAAAAC
AGTAAGCAAGACCCAATTAAATGCCTTCTTTTATGACACTTTGATATCTC
TTCACAGCGATAAACATATAACTAAATAGGGCTTATGAACCCCTCATTTT
CCACTCAGGAATGCTGACTGGTTTCATCTTGTGCATGCCTTGCTCAGCCA
AAAACAGCTGCTGAGAGTGGCAGTGCAATGGCCCTGTCATATCCAGAAAA
CTTAGCTTTACATCAGTCCTCCAAAACCTTTGGCTCCTATGATCTTACTA
TCCTCTTTTACACAGTGGACCAAAAGCTTTGGCAAAAGAAATGATATAAA
TGTTCCATTTGTGGTTGAGACCTCAACTAATACTCACTGTTTCCACTACC
TTCAGATTTGAGTTTCTACTTTGGATAATCACTGACCACTGCACAAAACT
CTCAGAAACTCAAGTTCTATTCTTCTAACATGGATACTGTAAGTGGTAGA
TATGGAGATAAGATGAGAATGCCATATAGTAAGTGGAACATAAAAATCTT
GGAAGTGGAG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATGACTGCCAAGTCTTGCTTCAGTTTTAAAAGCTT
CTTAGGATTTGATTCTTCTTGTCATCCTGGGCACACTGGCCATTCTTCAT
GCGGAGAAGCAGATCAGCCTTCACTGAGTAGTTCCTTTTTTCCTCATCTC
CAACTGTTGTCGACTCATCCTTCCATGCTAGCTGTTGGCCCTTTCGGTCT
TGGCATGTCCCCCAGGCTTATTATGTGACGACTGTTTGTGCATGTGATCA
ACATGGAATTATAGTAGAAATGAGGGAATATGTATATTTATCTGAGCCAG
ATGCTTGAGAGGTAATGTTTATTTGTGTCAGGCTTACACTTGAGAACTTG
GTCAAAACAATTATTTATCTGGGAAAGCCATAACTCAATAGGAAACTACA
TGCCTTGAAGTATTTTCTTAAAATTGTTTCTTCCTCCTTGATTCCTAATA
GCACAATTTCACTTCTCTGATTCTTCCTACAAGAGTAATTACTGACAGTT
GGTAGGCACAAATTTAAAAAACAAAAGGCTGAAGGGAAAAGAAACACTTG
TAAAAAAATACTTTATTTTTTCGAGTTACCATAATACTGTGCAGTGAGTA
ACAGCTCAAGATCTGAAGTGTGTGATTTGTTGGCCTGTGTGCCCACACAT
ACATAGAACTTGTAAAGGAAATTGGTAAGTATAATGGAAACAAAACCCTA
GTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_j04.g1 MSMg01no388_j04.g1 CHROMAT_FILE:
MSMg01no388_j04.g1 PHD_FILE: MSMg01no388_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:56 2005
         (604 letters)



>mm_chr19_14126036_14127040
          Length = 1005

 Score = 1120 bits (579), Expect = 0.0
 Identities = 597/603 (99%), Gaps = 1/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgactgccaagtcttgcttcagttttaaaagcttcttaggatttgattcttcttgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aatgactgccaagtcttgcttcagttttaaaagcttcttaggatttgattcttcttgtca 744

                                                                       
Query: 61  tcctgggcacactggccattcttcatgcggagaagcagatcagccttcactgagtagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcctgggcacactggccattcttcatgcggagaagcagatcagccttcactgagtagttc 684

                                                                       
Query: 121 cttttttcctcatctccaactgttgtcgactcatccttccatgctagctgttggcccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttttttcctcatctccaactgttgtcgactcatccttccatgctagctgttggcccttt 624

                                                                       
Query: 181 cggtcttggcatgtcccccaggcttattatgtgacgactgtttgtgcatgtgatcaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 623 cggtcttggcatgtcccccaggcttattatgtgacgactgtttgtacatgtgatcaacat 564

                                                                       
Query: 241 ggaattatagtagaaatgagggaatatgtatatttatctgagccagatgcttgagaggta 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaattagagtagaaatgagggaatatgtatatttatctgagccagatgcttgagaggta 504

                                                                       
Query: 301 atgtttatttgtgtcaggcttacacttgagaacttggtcaaaacaattatttatctggga 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 atgtttatttgtgtcaggcttacacttgagaacttggtcaaaagaattatttatctggga 444

                                                                       
Query: 361 aagccataactcaataggaaactacatgccttgaagtattttcttaaaattgtttcttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagccataactcaataggaaactacatgccttgaagtattttcttaaaattgtttcttcc 384

                                                                       
Query: 421 tccttgattcctaatagcacaatttcacttctctgattcttcctacaagagtaattactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccttgattcctaatagcacaatttcacttctctgattcttcctacaagagtaattactg 324

                                                                       
Query: 481 acagttggtaggcacaaatttaaaaaacaaaaggctgaagggaaaagaaacacttgt-aa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 323 acagttggtaggcacaaatttaaaaaacaaaaggctgaagggaaaagaaacacttgtaaa 264

                                                                       
Query: 540 aaaaatactttattttttcgagttaccataatactgtgcagtgagtaacagctcaagatc 599
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 aaaaatactttattttttcgaattaccataatactgtgcagtgagtaacagctcaggatc 204

              
Query: 600 tga 602
           |||
Sbjct: 203 tga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space:   591030
Effective search space used:   591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)