Query= MSMg01no388_j10.b1 MSMg01no388_j10.b1 CHROMAT_FILE:
MSMg01no388_j10.b1 PHD_FILE: MSMg01no388_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:57 2005
(535 letters)
>mm_chr19_27965732_27966666
Length = 935
Score = 878 bits (454), Expect = 0.0
Identities = 473/488 (96%), Gaps = 14/488 (2%)
Strand = Plus / Minus
Query: 48 ctggctagtgttagatttgcttggaaacacttgttatatcatcctagtgggcctgctcgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 ctggctagtgttagatttgcttggaaacacttgttatatcatcctagtgggcctgctcgg 876
Query: 108 aaggatttttttctcttttgtccttaagccccttttcctttgtttctcttctccttctct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aaggatttttttctcttttgtccttaagccccttttcctttgtttctcttctccttctct 816
Query: 168 ccctgcctactagaaagagtttcttgtttgaagttctctgggttgaatgttatattctta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccctgcctactagaaagagtttcttgtttgaagttctctgggttgaatgttatattctta 756
Query: 228 atacaaccatccacaaatgataataatagagtggtaataatttcttattgctctaatgtg 287
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 755 atacaaccatccacaaatga--------------taataatttcttattgctctaatgtg 710
Query: 288 cctgtaatgtttgaaatcttaattagaatgctgttgaatacttttagcttttatttgtga 347
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 709 cctgtaatgtttgaaatcttaattaggatgctgttgaatacttttagcttttatttgtga 650
Query: 348 cactggtagaaactgatggagattgaaatcaagtatcaatgttaaaggtagttaattctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cactggtagaaactgatggagattgaaatcaagtatcaatgttaaaggtagttaattctt 590
Query: 408 ttgattcagcttattagtataacttgattagaagtgacagtttttataatacccatcttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttgattcagcttattagtataacttgattagaagtgacagtttttataatacccatcttg 530
Query: 468 tctttttaaaatcctagattacatgactatatatctgtagaattgtgactaggtatggac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tctttttaaaatcctagattacatgactatatatctgtagaattgtgactaggtatggac 470
Query: 528 tcttagtc 535
||||||||
Sbjct: 469 tcttagtc 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_j10.g1 MSMg01no388_j10.g1 CHROMAT_FILE:
MSMg01no388_j10.g1 PHD_FILE: MSMg01no388_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:57 2005
(240 letters)
>mm_chr19_27794929_27795568
Length = 640
Score = 456 bits (236), Expect = e-133
Identities = 239/240 (99%)
Strand = Plus / Plus
Query: 1 ataagctggggtgccacttgctgaatatcttacaatgtgttcgcatcatgaaattgttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagctggggtgccacttgctgaatatcttacaatgtgttcgcatcatgaaattgttac 260
Query: 61 caattttatagggcttcaaattagaaaaaaataaaatcacccttttctattctattttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattttatagggcttcaaattagaaaaaaataaaatcacccttttctattctattttct 320
Query: 121 tatgtgacaagctattgaatttgaaagcctaaaatattcaaatttcctaagttattattt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tatgtgacaagctattgaatttgaaagcctaaaatattcaaatttcccaagttattattt 380
Query: 181 accagatttaattatctcttttagaatgtctttacaaaacacagccttgctagcccttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagatttaattatctcttttagaatgtctttacaaaacacagccttgctagcccttca 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
