Query= MSMg01no388_l07.b1 MSMg01no388_l07.b1 CHROMAT_FILE:
MSMg01no388_l07.b1 PHD_FILE: MSMg01no388_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:05 2005
(520 letters)
>mm_chr19_55103504_55104423
Length = 920
Score = 893 bits (462), Expect = 0.0
Identities = 483/490 (98%)
Strand = Plus / Minus
Query: 31 caggacacgacctatttggttcctgcaattgcttcctagcaatcactagtcatgaggctt 90
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 920 caggacacgacctatttggttcctgcaattgcttcctagcaatcactagttatgaggctt 861
Query: 91 gttgtcaccaagtccctctgatatagaggtctgcgatgcaactagcttttgtgagccatc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gttgtcaccaagtccctctgatatagaggtctgcgatgcaactagcttttgtgagccatc 801
Query: 151 tcaaatgggtgtttggaatcaaactcaaagccttcccaaaggcagtatagactttaacca 210
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 800 tcaaatgggtgcttggaatcaaactcagagccttcccaaaggcagtatagactttaacca 741
Query: 211 ccaagccatctccccagccctgatttcttttgaaacaagtgctttgactcttaattattc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccaagccatctccccagccctgatttcttttgaaacaagtgctttgactcttaattattc 681
Query: 271 caggtccatcctgaccaacttgctttacatggggtgcaagcctactccaagcctctgctt 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caggtccatcctgaccaacttgctttacatggggtgcaagcctactccaagcctctgcta 621
Query: 331 gcagagggattctaagaactgaacagtgagtgtggatgggtagaaattgggctaacctct 390
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 620 gcagagggattctaagaactgaatagtgagtgtggataggtagaaattgggctaacctct 561
Query: 391 gacctgacactgagatcaaggaagaagtctcttcccttagattctagcaagagtgattca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacctgacactgagatcaaggaagaagtctcttcccttagattctagcaagagtgattca 501
Query: 451 tgtaagctttttggaattcaaattgaacccatttatcaaaatagatgtcttgaaaatcca 510
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 tgtaagctttttggaattcaaattgaactcatttatcaaaatagatgtcttgaaaatcca 441
Query: 511 gttagaaacc 520
||||||||||
Sbjct: 440 gttagaaacc 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_l07.g1 MSMg01no388_l07.g1 CHROMAT_FILE:
MSMg01no388_l07.g1 PHD_FILE: MSMg01no388_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
(530 letters)
>mm_chr19_54883247_54884175
Length = 929
Score = 899 bits (465), Expect = 0.0
Identities = 519/549 (94%), Gaps = 20/549 (3%)
Strand = Plus / Plus
Query: 1 tcattgggcagtggtggcacacacctgtaatcccagcacttgggaggcagaggcaggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tcattgggcagtggtggcacacacctgtaatcccagcacttgggaggcagaggcaggagg 241
Query: 61 atttctgagttcaaggccagtttggcctacagagtgagttccaggtcagccagggctaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atttctgagttcaaggccagtttggcctacagagtgagttccaggtcagccagggctaca 301
Query: 121 cagagaaaccctgtctcgaa-------------------aaacaaacaaacaaaaaacca 161
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 302 cagagaaaccctgtctcgaaaaacaaaaaaacaaaaaacaaacaaacaaacaaaaaacca 361
Query: 162 aacaaacaaaaaagtaaattctctagactcttcagcattttgaggactacacaaattcat 221
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 362 aacaaacaaaaaagtaaattctctagactcttcggcattttgaggactacacaaattcat 421
Query: 222 ttcagagtgtcagtgttaatatgtatatgagtcattcaaggctcctgagtctaatctgga 281
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct: 422 ttcagagtgtcagtgttaaaatgaagatgagtcattcaaggctcctgagtctaatctgga 481
Query: 282 tagagagcagagaactacaaatgtgttaatattttacatgaataaaaaaaaaagttttac 341
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 482 tagagagcagagaactacaaatgtgttaatattttacatgaat-aaaaaaaaagttttac 540
Query: 342 aaaggtacgaaatgctgcttagaagaccagggcttgccattctcttggtctaaaggcagt 401
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaggtacaaaatgctgcttagaagaccagggcttgccattctcttggtctaaaggcagt 600
Query: 402 aagaacaggctaggtagtaaggtcaccaaattgttgaaagaataccagacttcacatccc 461
|||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagaactggctcggtagtaagggcaccaaattgttgaaagaataccagacttcacatccc 660
Query: 462 ctctaagacactgatatcatctagaagccggctgaccaacactagctgagctcttctctc 521
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 661 ctctaagacactgatatcatctagaagccgggtgaccaacactagctgagctcttctccc 720
Query: 522 ttgcctgtt 530
|||||||||
Sbjct: 721 ttgcctgtt 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
