Query= MSMg01no389_a02.b1 MSMg01no389_a02.b1 CHROMAT_FILE:
MSMg01no389_a02.b1 PHD_FILE: MSMg01no389_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:28 2005
(523 letters)
>mm_chr19_42016822_42017747
Length = 926
Score = 905 bits (468), Expect = 0.0
Identities = 507/522 (97%), Gaps = 5/522 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtataccaggctggcctcgaattcagaaatccgcctgcctctgcctcc 63
||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcactttgtagaccaggctggcctcaaattcagaaatccacctgcctctgcctcc 263
Query: 64 tgagggctgggattaaaggtgtgcaccaccataaagaaaataattgtacaagtatttttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgagggctgggattaaaggtgtgcaccaccataaagaaaataattgtacaagtatttttt 323
Query: 124 ctgtgtacatgtatgcacgtcatgtgcatctggtacctgagtcgggagagggcactggat 183
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtgtacatgtatgcacatcgtgtgcatctggtacctgagtcgggagagggcactggat 383
Query: 184 ggatcccttaggactggagatggttacaacttgccatatgggcattaggaatcaaaactg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggatcccttaggactggagatggttacaacttgccatatgggcattaggaatcaaaactg 443
Query: 244 ggtcctctgtaggaataaccagtactcaactgctgagccatctctccagcccctaaaact 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtcctctgtaggagtaaccagtactcaactgctgagccatctctccagcccctaaaact 503
Query: 304 gtggtttaaaaggtatggt----tcaagacaactagagaagagcttgtggttaggcactg 359
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtggtttaaaaggtatg-tcttctcaagacaactagagaagagcttgtggttaggcactg 562
Query: 360 tatgtggagttcaagccaactgtgagagactgaggtaacttacacatgacagaggcccta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tatgtggagttcaagccaactgtgagagactgaggtaacttacacatgacagaggcccta 622
Query: 420 tagcaatgtgtgagactagctctgtccagtccaagaggaacccattttctaaactgcaga 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagcaatgtgtgagactagctctgtccagtccaagaggaacccattttctaaactgcaga 682
Query: 480 ttactaggccaggcatgatcacatacatctgtaatcccatca 521
|||||||||| |||||||| || |||||||||||||||||||
Sbjct: 683 ttactaggcctggcatgattacgtacatctgtaatcccatca 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 926
Length adjustment: 10
Effective length of query: 513
Effective length of database: 916
Effective search space: 469908
Effective search space used: 469908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_a02.g1 MSMg01no389_a02.g1 CHROMAT_FILE:
MSMg01no389_a02.g1 PHD_FILE: MSMg01no389_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:28 2005
(275 letters)
>mm_chr19_42179842_42180514
Length = 673
Score = 453 bits (234), Expect = e-132
Identities = 262/272 (96%), Gaps = 2/272 (0%)
Strand = Plus / Minus
Query: 4 cagagataaagaaaccttgtttcaaaaaacaacttaagaaaattggtgatccaagaaccc 63
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 473 cagagataaagaaaccttgtttcaaaaaacaacaaaagaaaatccgtgatccaagaaccc 414
Query: 64 acttcaaaaaagtcatgaaggaccctagagtgagtgtacttttcacagagtttggaagag 123
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 413 acttcaaaaaagtcataaaggaccctagagtgagtgtacttttcac--agtttggaagag 356
Query: 124 ccaggcaaatcccaactcaggctttactgcctctgacaacttgcagatgctatatctaga 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ccaggcaaatcccaactcgggctttactgcctctgacaacttgcagatgctatatctaga 296
Query: 184 caaaatgtaacctggaaaattgatctgccaggcccattacaaatacccattctaacacag 243
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 295 caaaatgtaacctggaaaattgatctgccaggaccattacaaatacccattcaaacacag 236
Query: 244 gaaaacacattcctcacaaagacttcagttcc 275
||||||||||||||||||||||||||||||||
Sbjct: 235 gaaaacacattcctcacaaagacttcagttcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 673
Length adjustment: 9
Effective length of query: 266
Effective length of database: 664
Effective search space: 176624
Effective search space used: 176624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
