BAC Information

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BAC

Clone NameMSMg01-389M11
Chromosome19 (Build37)
Map Location 26,822,018 - 26,931,347
singlet/doubletdoublet
Overlap geneSmarca2
Upstream geneEG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M11.T7 (MSMg01no389_m11.b1)MSMg01-389M11.TJ (MSMg01no389_m11.g1)
ACCAG491952AG491953
length753752
length of high quality
(start - end)
155 (165 - 319)273 (76 - 348)
definitionCHROMAT_FILE: MSMg01no389_m11.b1 PHD_FILE: MSMg01no389_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:29 2005CHROMAT_FILE: MSMg01no389_m11.g1 PHD_FILE: MSMg01no389_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,931,196 - 26,931,347)(26,822,018 - 26,822,289)
sequence
NCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCAAACAATTCGCACAAAACTACCTACTATTTACACGTGTGCATA
CATGTGTGCCTACATGCATGTTTGTATGTATGTAGGTACATGTCTATCTG
CAGGTATGCGGAGGCCAGAGGGTACAAAACCGCTCTCTCTATATAACACT
TCACTGTATTAAGTGGGGCAGAGTCTCTCTATAAACCTTGATTCAGTTAG
CCTATTCAGCTGACTTTGCTCCAGGGATTCCATGACTTTGCCTTCAAAGC
ACGGGGGATTATAAACAATGTCATAATTACCCAGTTTGTAAGTATGGACG
TGGAGATCAGAGCTCCATCCCTTGTGTTTGCATGGCAAGCATTTTCCTAC
TGGACCCTCCTGCAGTTCACAGCTCTCTACTTCTGCAGTAAACACTGTTT
TCTATAGTGAAGCCAGAACCTAGACACCCACTGCACATGTCGTATCAGAA
AGGGAAGGGTGAAAGTAGTTATGCTTGGACTTACGTACTTTCTTTAACGA
TCTCTTACCCTTTGCTGCTGACCTTCCTTGACACACAAGATTTGTCTCTC
TTGCTCCGGAACCTGGCCTACGCCTTGAGGATTCCTTTGGCCACCGGAGC
ACTTTGATCTGCCCTCCTGCAGCCCTCCTGCACTGCACCGGACTAAGGCT
ATCATCCCTTGCCGCTTTCTCTCCTGCAGTCTGCCCCCTGTTCCCCCGGT
TAN
NCCCGATGCAGTGGGAGGCCTGGNGGNCGCCCGGTTGNCTATTTGAGGTG
AACTATAGAAGTTTACACCACCTCCTGCTTTACATGTTTCCTAGAGATGG
TTTGGGCCATAGTGAGAGGGCCCTATGACACTGCCGGGTGCTTCAGCGAG
GAGGCAAGGGTGGGAACAATGGGCAGAGTGGCTTTTTGTTCTCCCGCCGC
TGTTTACCTATTCACAATCCTGAAGCTGCTCCGCTGTGATGGGGGATGTC
ATTTTTAACTCCACCCCCGCCCCCACATCCCCCACCCCCTGGCTGAGAAG
GAGCATAATGCCGGCTTTCGATACCTTCCCTCATTCAGNGAAAGATGGAG
NTGGCGTGTGTTTTGATGACAGAGAGGCACGGGGGAAGCCAGCACGTGTG
GCTGATTATCGGGGCCACCATGTGCTTTACAGGCTCCGGTGTCTGCTCCG
GAGCTGGTCCCTGCATGGCCGCCTCCCGGCCGTCCTTGTCAGCACCGCTG
CTTTCTTAAGAATCATTGGAGAGCAAGCCTGTCCCTCCCTCCGCTGCGCG
TGCACATTCCGTTTTCCTGAACACGTCTTTTTCTCTTTACCCTAACCGAA
CTAAACCCCGGATAGTCACCACGGTACACCCCTCGCTCCAACAACCGCCC
ACCTTTTTTTTTTTTTTTTCTTAAACCCCCAACCCCCCTTAATCCCCCCT
AATCCCCCCCCACCTTTCCCCCCCTCTCCCTTTCCCCCCCCCCCTCCTTC
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m11.b1 MSMg01no389_m11.b1 CHROMAT_FILE:
MSMg01no389_m11.b1 PHD_FILE: MSMg01no389_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:29 2005
         (155 letters)



>mm_chr19_26930996_26931550
          Length = 555

 Score =  232 bits (120), Expect = 7e-66
 Identities = 144/152 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagagggtacaaaaccgctctctctatataacacttcactgtattaagtggggcagagt 60
           ||||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct: 352 ccagaggttacaaaaccgctctctctagataactcttcactgtactaagtggggcagagt 293

                                                                       
Query: 61  ctctctataaaccttgattcagttagcctattcagctgactttgctccagggattccatg 120
           ||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||
Sbjct: 292 ctctctataaaccttgattcagttagcctagccagctgactttgctccagggagcccatg 233

                                           
Query: 121 actttgccttcaaagcacgggggattataaac 152
           ||||||||||||||||||||||||||||||||
Sbjct: 232 actttgccttcaaagcacgggggattataaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no389_m11.g1 MSMg01no389_m11.g1 CHROMAT_FILE:
MSMg01no389_m11.g1 PHD_FILE: MSMg01no389_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:29 2005
         (273 letters)



>mm_chr19_26821818_26822490
          Length = 673

 Score =  474 bits (245), Expect = e-138
 Identities = 265/272 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttacatgtttcctagagatggtttgggccatagtgagagggccctatgacactgcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tgctttacgtgtttcctagagatggtttgggccatagtgagagggccctatcacactgcc 260

                                                                       
Query: 61  gggtgcttcagcgaggaggcaagggtgggaacaatgggcagagtggctttttgttctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgcttcagcgaggaggcaagggtgggaacaatgggcagagtggctttttgttctccc 320

                                                                       
Query: 121 gccgctgtttacctattcacaatcctgaagctgctccgctgtgatgggggatgtcatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | 
Sbjct: 321 gccgctgtttacctattcacaatcctgaagctgctccgctgtgatgggggatgtcacgtg 380

                                                                       
Query: 181 taactccacccccgcccccacatcccccaccccctggctgagaaggagcataatgccggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taactccacccccgcccccacatcccccaccccctggctgagaaggagcataatgccggc 440

                                           
Query: 241 tttcgataccttccctcattcagngaaagatg 272
           |||||| |||||||||||||||| ||||||||
Sbjct: 441 tttcgagaccttccctcattcagtgaaagatg 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)