Query= MSMg01no390_k01.b1 MSMg01no390_k01.b1 CHROMAT_FILE:
MSMg01no390_k01.b1 PHD_FILE: MSMg01no390_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:36 2005
(163 letters)
>mm_chr19_39090331_39090893
Length = 563
Score = 281 bits (145), Expect = 2e-80
Identities = 157/161 (97%)
Strand = Plus / Minus
Query: 1 gagatatgaaaagccctagcaaatagttattaataccaagtaaccacctgacagctttta 60
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagatatgaaaagccatagcaagtagttattaataccaagtaaccacctgacagctttta 302
Query: 61 aacagccctttgtttacagggtaaacacaaaagaaaatcaaaatatgataagcatcatta 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 aacagccctttgtttacagggtaaacacaaaagaaaataaaaatatgataagcatcatta 242
Query: 121 ctggcagaagttgcaagcatgggtcttgaagcaaacatgtg 161
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 ctggcagaagttgcaggcatgggtcttgaagcaaacatgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space: 86025
Effective search space used: 86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_k01.g1 MSMg01no390_k01.g1 CHROMAT_FILE:
MSMg01no390_k01.g1 PHD_FILE: MSMg01no390_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:36 2005
(233 letters)
>mm_chr19_38951792_38952426
Length = 635
Score = 439 bits (227), Expect = e-128
Identities = 233/235 (99%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 1 agaacaattctggcttatacttgttggagggggaacattaactttaacagaggaagaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacaattctggcttatacttgttggagggggaacattaactttaacagaggaagaagt 260
Query: 61 aattaaga-gggagaagagcagtcaagctaacagttaaacaggctaagagaaccgagaat 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaagaggggagaagagcagtcaagctaacagttaaacaggctaagagaaccgagaat 320
Query: 120 tggttttt-cccccataatcagaagagagtcttggaaataatttatagtttgaaaatact 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtttttccccccataatcagaagagagtcttggaaataatttatagtttgaaaatact 380
Query: 179 ctgctattttttgcattagtagtttgaatatcaaagtcacgttaaaagcatgatt 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctattttttgcattagtagtttgaatatcaaagtcacgttaaaagcatgatt 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 635
Length adjustment: 9
Effective length of query: 224
Effective length of database: 626
Effective search space: 140224
Effective search space used: 140224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
