BAC Information

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BAC

Clone NameMSMg01-390N15
Chromosome19 (Build37)
Map Location 52,118,098 - 52,118,377
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936
Downstream geneIns1, LOC100043450, Xpnpep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390N15.T7 (MSMg01no390_n15.b1)MSMg01-390N15.TJ (MSMg01no390_n15.g1)
ACCAG492764AG492765
length742752
length of high quality
(start - end)
280 (142 - 421)455 (86 - 540)
definitionCHROMAT_FILE: MSMg01no390_n15.b1 PHD_FILE: MSMg01no390_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:53 2005CHROMAT_FILE: MSMg01no390_n15.g1 PHD_FILE: MSMg01no390_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCATCAXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCACACATC
CGCGGAATTCTCAGGGGTGCATGAAACCCACTGACACAGATGTATAACCC
AAAACTCAGGCAGCAGGTGACCTAAGATATCTACAAATTCAGCCCAGCAC
AAAAATCTCAAACATGTATAACAGTGGCTGATATTTTGTTGTTTTTATTA
TTTGTAATTAAAATATACTTACATAACTTGCCCTTTCCCTTTTCTCTCTC
TTGCTAGGTACCCATCTCTTCTCTCTCTTAAATTTATGGCCTCTGGCCTC
TGTTTTTCTTTACTGGTGTGTGTGTGTTTTTAGAATCTACTCTCTCATAT
AGTGTTACTTGTATGTATGTGGTTTCAGTAGTGAGTGCTTGGCCTCACAT
GGGTTTTGGAATAGAATCTACCACCCTCTTGTAGCAGAATAATACCCAAC
TGCACTATGACCACTTTTTAAAAAAAAACCTCAATTGTATGGTTCTAGAG
CAGCCTCTGTAGAGGACATTTCCCTGTGGCAGTCAAATTTCTGGACACAC
CTGGGCTAATTGTTAACCCTTAAGTCTGTTTTTTTTCCCCTTTCCTTGGG
TTTTAGAAACTGGAACCCCGTACAATATATCCTTGCCATATTTAACCATC
CATTACGGCATATATTATATTGCAGGACTAGAGACCATGTACTTGAAAAA
AAATTTCCCGCTGGATCGGCCACACCACAACTTCCAACATTC
TTTTTTTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGATGTTGAT
AGTAGGTTCATAGCAGTGTTTTATTCTGTAAGCTCATTACAAGTGCAAAG
CAAGAGTTTCACATGGCTTTGCTTTGTCATAGTGCACGCCTGTGGCTTCA
CCCTTGAACTTGACCTTGATGAATGCTTTTCCCTGATAACAAATCTGTCC
CAAGCCTGTATTTCTCAGTGTAATTCATGAAATCTCAGTATATCCCTTAG
TATGCAGCATTTACTTACTACTCTATAAGAAGGGGGCACATCATATTCTT
GACTCTAACTGTATTACATATTGCTGGCACGACAACTAAAACCTTTTCCT
TAAAATTTATTCCTAAGATTATTTGACTCAATTCGCAAATTCTACAAAGT
CCTTAATTCATCTAAATGGCATCAATTCATGAAAGTTTGTCTTCATGTTC
ATCAGTAGGAAATTTGCCCAATAGGATAGGCTAACACCCAGGAATCATTA
GGCTATGCAATAGAGGCAGGAAAGACATATTAGCAGGAAAGAGCAATCCT
GGAATGAAATCTCTGAAGCCCCCTGCTCTCAGAGTGTTCCATCCCAGCCC
CTATAAACAGGGAAAATCTCCCGAAGGCCGCTTGCCCAAACCCTCCTAAA
AGGGTATAGGCCCTTTAATAATCCGGTCCTTGGGTTCCAAAGAAAAAAAA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_n15.b1 MSMg01no390_n15.b1 CHROMAT_FILE:
MSMg01no390_n15.b1 PHD_FILE: MSMg01no390_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:53 2005
         (280 letters)



>mm_chr19_52117745_52118424
          Length = 680

 Score =  472 bits (244), Expect = e-137
 Identities = 271/280 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcccagcacaaaaatctcaaacatgtataacagtggctgatattttgttgtttttattat 60
           |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct: 633 gcccagcacaaaaatctcaagcatgtctaacagtagctgatattttgttgtttttattat 574

                                                                       
Query: 61  ttgtaattaaaatatacttacataacttgccctttcccttttctctctcttgctaggtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 573 ttgtaattaaaatatacttacataacttgccctttcccttttctctctcctgctaggtac 514

                                                                       
Query: 121 ccatctcttctctctcttaaatttatggcctctggcctctgtttttctttactggtgtgt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ccatctattctctctcttaaatttatggcctctggcctctgtttttctttactggtgtgt 454

                                                                       
Query: 181 gtgtgtttttagaatctactctctcatatagtgttacttgtatgtatgtggtttcagtag 240
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 453 gtgtgtaaatagaatctactctctcatatagtgttacttgtatgtatgtggtttcagcag 394

                                                   
Query: 241 tgagtgcttggcctcacatgggttttggaatagaatctac 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgagtgcttggcctcacatgggttttggaatagaatctac 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)