BAC Information

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BAC

Clone NameMSMg01-391F10
Chromosome19 (Build37)
Map Location 24,971,455 - 24,971,699
singlet/doubletsinglet
Overlap genenone
Upstream geneApba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195
Downstream geneFoxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F10.T7 (MSMg01no391_f10.b1)MSMg01-391F10.TJ (MSMg01no391_f10.g1)
ACCAG493135AG493136
length765812
length of high quality
(start - end)
245 (60 - 304)171 (78 - 248)
definitionCHROMAT_FILE: MSMg01no391_f10.b1 PHD_FILE: MSMg01no391_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:31 2005CHROMAT_FILE: MSMg01no391_f10.g1 PHD_FILE: MSMg01no391_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGCCGCTAAACGACTCCTATTTTCACAAATCCGCGGAATTCTTTACTGT
CTCTACCCTAGCTACTTCGGTTCTAGTGACCTGGGCTTGACCTTGACGCC
ACAGGTGCGGAACGCTTGGTTTTGAAAATAAGTGTGCCAGGATGTTGCCT
CCCCAGGAAACAATTTCTCCTAGGTGAACAGTTTCCCTCTGTGAACGGTG
GGGTTCTGCAGTCTTTTCTTCAGGGAATTTTCAGTGGGTCAATGCCTGGC
GCTCCAGGAGCAGAGGGCAGAGAGTAGCTGATGGTAAGCGCCATTCATTC
CTAGATTTTTTATACCAGGGTAGTGCCCTCCCGCTCTGACCGTGGGGATG
GTCCGCACAATCCGTTCAGGATCCGTCCAGTCAGTCTGTCGCCATGAGAC
CGCCCAGCTTTTGGGATCTCAGAGGCCACACTAGTTTAAAAAAAAAAAAA
AAAGCCCAGCCCAAGATACCCGCGCGACGTGGAATCCAGAACCGCCGACT
GTGGCTCCGCGTGGCCGCGCACTAAGCTTGCAGCATCGCCCCACCGTGTC
CGTATCGTGTCTCCCCCCTGCTCCTGGAATGCGGCCCCCCCACTTATATC
CCTCCCCCCTTTTTTTTTTTCTCCCCTCCCCCCCCTCCCCTTTTTTTTTT
CTTTTCCCCCCTCCCTCTCTTCCTTTCTTTTTTATCTCCCCCTCCCCCTC
ACGCCCTTTTTCTCTCCCCCCCTTTTTTACTTTTCCACCCCACCTATATA
TTTCTTCCCCCCCCC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCCCCATCCAGACTTACAG
GGACAGAAACCTGGTGAAGGGCCTGTGTTAGATCATGTATTCCAGATGAT
CCTGTGCATACTAAAATTGGAGAACTGCTGGTTTTTTAAAAGATTTTATT
TATGTATTTATTTATGTGTATCTATACATGAGGGTATGTGCACCTGTATG
TGTTCACAGAAGGTGAGAAACAGTGCTGATGTCCTACTTCATTATTCATT
GCCTATGTCTTTAATACTGGATCCTTCCTGAACCATGTTTTATTGTTTGT
TTGCTTTTGTTTTTCCTAGCTAGGCTGGAAGCCAGCTTTCTCATGTCTCC
ACCTGTCTCAGAACCGCCCTTACAATTATCTGCGTCTACACCTGCTTTGC
CACTTATGCCTATTTTTTGACCTCCATCCCTCGCTCTCCGCCTCTTTCTG
CCTCCCCTTCTCTGCCCATCTTATCGTCTTCCCTAGCCCTACTCCCCCCC
CTTTGTCTTGCCCTGTTTTTCTCCCCCTTTCTTCTCCCTCTTTCTTTCTT
CCTCCCCCTCCCTCCTTTCTCTTATTTTTTCTCCCCCTTTCCCTCCCCCC
CCCTTTCTTTCCTTTCTTCCCCTTTTCTTCTTTCTCTTTCCCCTCTTCCC
CTCTTTTTCTCCCCCCCACTCCACCTATTTCTCTTCTTTCCTATTTCTCC
CTTCTACCCCTTCTTCTCCCTTCCTTCCCTTTTCCCTCCCTTCTTCCCCG
TTCTCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f10.b1 MSMg01no391_f10.b1 CHROMAT_FILE:
MSMg01no391_f10.b1 PHD_FILE: MSMg01no391_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:31 2005
         (245 letters)



>mm_chr19_24971255_24971899
          Length = 645

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctacttcggttctagtgacctgggcttgaccttgacgccacaggtgcggaacgcttgg 60
           |||||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct: 201 agctactttggttctagtgacctgtgcttgaccttgaggccacaggtgcggaaagcttgg 260

                                                                       
Query: 61  ttttgaaaataagtgtgccaggatgttgcctccccaggaaacaatttctcctaggtgaac 120
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgaaaataagtgtgccgggatgctgcctccccaggaaacaatttctcctaggtgaac 320

                                                                       
Query: 121 agtttccctctgtgaacggtggggttctgcagtcttttcttcagggaattttcagtgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttccctctgtgaacggtggggttctgcagtcttttcttcagggaattttcagtgggt 380

                                                                       
Query: 181 caatgcctggcgctccaggagcagagggcagagagtagctgatggtaagcgccattcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgcctggcgctccaggagcagagggcagagagtagctgatggtaagcgccattcatt 440

                
Query: 241 cctag 245
           |||||
Sbjct: 441 cctag 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)