Query= MSMg01no391_g14.b1 MSMg01no391_g14.b1 CHROMAT_FILE:
MSMg01no391_g14.b1 PHD_FILE: MSMg01no391_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:37 2005
(412 letters)
>mm_chr19_15404494_15405305
Length = 812
Score = 735 bits (380), Expect = 0.0
Identities = 399/412 (96%), Gaps = 11/412 (2%)
Strand = Plus / Minus
Query: 1 gaggaaaatgtgaaattttggccgaacatgtgcatttcccatttctgccaaggaacttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaggaaaatgtgaaattttggccgaacatgtgcatttcccatttctgccaaggaacttgc 401
Query: 61 tggcaaagagtgaaacgcctgttggacatggtggctggcttgattcccagctcaaccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tggcaaagagtgaaacgcctgttggacatggtggctggcttgattcccagctcaaccagc 341
Query: 121 ccacaccttgtttggcatcatggactgaagattttgcatgctcacagggccaatgcatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccacaccttgtttggcatcatggactgaagattttgcatgctcacagggccaatgcatga 281
Query: 181 tatttccagacaaaccttcctgtagtcacctccaaaggtctctcttcattcaaaaagata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatttccagacaaaccttcctgtagtcacctccaaaggtctctcttcattcaaaaagata 221
Query: 241 agctactcttttgctaagccaagtacggtctagggattagcagcaaaataccaacaggga 300
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agctgcacttttgctaagccaagtacggtctagggattagcagcaaaataccaacaggga 161
Query: 301 atgtgttagaaaggtaaagtgtcaggccctacagcagacttccacaatcctttccagact 360
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 160 atgtgttagaaaggtaaagtgtcaggccctacagcaga-----------ctttccagact 112
Query: 361 cgcacatgactcctgtactcatcaagtgttgagaaccacttgcttgtacact 412
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cgcacatgactcctgtactcatcaagtgttgagaaccacttgcttgtacact 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_g14.g1 MSMg01no391_g14.g1 CHROMAT_FILE:
MSMg01no391_g14.g1 PHD_FILE: MSMg01no391_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:37 2005
(476 letters)
>mm_chr19_15229227_15230101
Length = 875
Score = 859 bits (444), Expect = 0.0
Identities = 468/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 1 ctcagtggcagaagcagcacttgtgggaagtggtggctgggacatgacacatcctcccaa 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagtggcagaagcagcgcttgtgggaagtggtggctgggacatgacacatcctcccaa 260
Query: 61 gggaaaaggatgctgttttccccagcagtgatctccattagtccttggtccagctgattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaaaggatgctgttttccccagcagtgatctccattagtccttggtccagctgattt 320
Query: 121 ctcccagtcataacaaattaagatgcttcagaggcaagcagtgcccgcaagtgatctatc 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ctcccagtcataacaaattaagatgctttagaggcaagcagtgcccgcaagtgatctatc 380
Query: 181 tccgagtacataccatcttccttctactaaacctccctaaatgtcatatttttcataaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccgagtacataccatcttccttctactaaacctccctaaatgtcatatttttcataaga 440
Query: 241 taattatacgtcttttgttgagaaagattctgagttaggaaaccctgctgctcccctgct 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattatacg-cttttgttgagaaagattctgagttaggaaaccctgctgctcccctgct 499
Query: 301 ttctgcaggaactcattctggggatatttttcttttattccggaagataaaactttggaa 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 ttctgcaggaactcattctggggatatttttcttttactccggaagataaaactttggaa 559
Query: 361 acttgatttcattggatgtttattgtcatgtctgagaaagtttaagcgatcagaagttct 420
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 acttgatttcactggatgtttattgtcatgtctgagaaagtttaagcgaccagaagttct 619
Query: 421 ctcttaagttgttaaggcaacaaaagaaatggagtttaggacagagaaactctttc 476
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 620 ctcttaagttgttaaggcaacaaaagaaacggagtttagaacagagaaactctttc 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
