BAC Information

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BAC

Clone NameMSMg01-391J15
Chromosome19 (Build37)
Map Location 7,177,354 - 7,177,595
singlet/doubletsinglet
Overlap geneD930010J01Rik, Flrt1
Upstream geneLOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1
Downstream geneOtub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J15.T7 (MSMg01no391_j15.b1)MSMg01-391J15.TJ (MSMg01no391_j15.g1)
ACCAG493335AG493336
length793798
length of high quality
(start - end)
242 (68 - 309)242 (71 - 312)
definitionCHROMAT_FILE: MSMg01no391_j15.b1 PHD_FILE: MSMg01no391_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:52 2005CHROMAT_FILE: MSMg01no391_j15.g1 PHD_FILE: MSMg01no391_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAANGACTACTATATTTCCAGATCCGCGGAATTCACCTGCC
CTCGTCTCCGGATTATCAACTGTGACCTTATGTGGTTCCTATTCTTTTTG
TTTGTTTTTTCAAGATAGGGTTTCTCAGCCGGGAAGTGGTGGCACACGCC
TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAG
GCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAA
AAACCCTGTCTCGAAAAACCAAAAAAGATAGGATTTCTCTGTCCTGCTCT
ACTCAGCTCTAGTACTTATTCAATACTAATATTGCATATATGGGCTATAT
ATTTAGACATTGTCTCCCCTGGGCTGGAGGCACATGACTATAGCTGTCCT
CCCCCCCCCCCCGCACACCAGGCTGGACTTGAAATCATAGAGACCTGCCC
TGCGCTCCCCCCTGACTGCCCCACTCACCGACTTCCCCCCACCCCCCCCC
CTCTTGTATCTTCCACCCCTTATACCCCGCCACGCCCTTCTTCTCCCCCC
CCTGTAACCTTCGGCCTGTAACCCCCCCCCCTCCCCCCGGCGCCCCATTC
CCCCCCCCCCCCTATACCCCCCCTCTCCATCCTCTTTCCCCACCTTCCTC
CCCCCCCCCCCCATCCACCTCCCCCCTTTTTACTTTCCCTCCATCACATT
TTATCTTTCCCTCTCGCCTTTCCTCCTCTCCGCATCACCCCCTTTCTTCT
CCCCCTGCTCTCCCCCCCTCCCTTCCCTTTTCTTTCTCACCTG
ACGATGCAGTGGGAGGCCTGGNGGNCGCCTGTTCCCAACTTTAGGTGAAC
TATAGAATTCCCCGCGAAATTCTGTGAGAGACCTATCTTAAAAGATAAGG
TGCAGAGCAATAGAGAAACACATACAGCCATGTCAGCCTCTGGCCTCACA
CTCAGACACAGAGTATGCGTAATGTAGCCTCTCTGAGCCAGGCTTACTGC
TGGGCACAGGATGGACCACACCTGAAAAGCGGGTGTTTAGGTCCGGTGGA
GAGGGCCGTTCTCGTAATGGGAATCCAGGAAACCGGAGATCACAAATAGA
ATCCTCACGGAGTGCTGGTCTGGTTGGCTCCTTGCTTCTGCGGGGCCCTG
GTCTCCTTGTCTGCCTGGGAGTCTCTCTGATCAGCCCTTCCTCCACATCT
GCTCCTCTCCTCTAGGCTCCTGTAGTTAATCTGCCACTTTACTACCAAGG
ATTCATACCCAGCCCTGGCTCTTGGCACTCACATGCCTCCAGCATTGCCC
CTACTTCCTATCCCCTGACACTTGTCTTATCCCCTGTCTCCCCTCCTCTC
TCTTCCCCAAATGAAACTGCCCCCCCACCGGCACCTTATCTTCTCTCCCT
TTTTCCCCCCCCGCCCCCTTCTCCCCTGTCGGCTGTTATTCCCTCCATCA
CCCCCTTTCTCTCTTTCCTTTTTTACTCCTCACCCCCCCCTTCCGCTTTC
TCTTTACCCCTTCTTCCCTTTCTTTCCTTCCCTTCCCCTCCCTTTCTTCT
CCCTTTTTCTCTGTCCCCGCCCTCCCCCCCACCCTCTCCTTTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j15.g1 MSMg01no391_j15.g1 CHROMAT_FILE:
MSMg01no391_j15.g1 PHD_FILE: MSMg01no391_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:53 2005
         (242 letters)



>mm_chr19_7177064_7177705
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgagagacctatcttaaaagataaggtgcagagcaatagagaaacacatacagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tctgtgagagacctatcttaaaagataaggtgcagagcaatagagaaacacatacagcca 473

                                                                       
Query: 61  tgtcagcctctggcctcacactcagacacagagtatgcgtaatgtagcctctctgagcca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 472 tgtcagcctctggcctcacactcagacacagagtatgcgtaacgtagcctctctgagcca 413

                                                                       
Query: 121 ggcttactgctgggcacaggatggaccacacctgaaaagcgggtgtttaggtccggtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggcttactgctgggcacaggatggaccacacctgaaaagcgggtgtttaggtccggtgga 353

                                                                       
Query: 181 gagggccgttctcgtaatgggaatccaggaaaccggagatcacaaatagaatcctcacgg 240
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaggaccgttctggtaatgggaatccaggaaaccggagatcacaaatagaatcctcacgg 293

             
Query: 241 ag 242
           ||
Sbjct: 292 ag 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)