BAC Information

Click to search

BAC

Clone NameMSMg01-391M19
Chromosome19 (Build37)
Map Location 28,166,994 - 28,167,241
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M19.T7 (MSMg01no391_m19.b1)MSMg01-391M19.TJ (MSMg01no391_m19.g1)
ACCAG493486AG493487
length749789
length of high quality
(start - end)
238 (70 - 307)246 (67 - 312)
definitionCHROMAT_FILE: MSMg01no391_m19.b1 PHD_FILE: MSMg01no391_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:08 2005CHROMAT_FILE: MSMg01no391_m19.g1 PHD_FILE: MSMg01no391_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATATCCAGAGCATCCGCGGAATTCAGAGTT
TTCCAGATAACATCAACTCAATGAGGAGAATAATGATGAACACCTGAGAG
ACGCCCAAGGCAACACAGATCAGCTTAATGAGTAAGACAATTCGGGATTT
GAAAACAATTCAATAAAACATAAATAAATAATATGAACATAGAAAAGTCA
TGGTGAAATGAAGACAAGACTGAAAATCTCAACAAGCCAACTAGAAAACG
CAGGAGAAAGCCTTACAGGCACATTGGATTAAGCAGAAGATAGAATATCA
GGATTTGATTATTACAAGAGGACTGAACCACACAAGCAAGAATATGAAAA
AAATTATGGCACACAAACAAACGTGCAGGTACTGTGGGAAAGCATCAAAA
TGTCAAATTATCGAATTATAAGGATATAAGAAGGAGGGTCCCAAGTCAAG
GGCTTTCATCAGTATCACCGAACTTAGCCAAATTAAGGAGATATCTCACT
CCCCATCACAAGCACACCAAATAAATAAGATGAGGAAAGAAACTATCCAC
AGCACACTAAAGTTAGAAGACTAAAACACAGAACAAAGAAAGAACTGGAA
GCTGCGAGACAAAGCCCACGAGTCACATGGGGATGAAAACCCATTGGAGT
AACAGAATTTCTCATTGGAGACTCTGAGAGCCAGAAAAACCTGAAGCCAG
CACTCCGAGCTCCGCAAGAATACTTTGCCCCAATGGATGACCATAATTA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCGCGAAATTCACACCTTCTGTGTTGGTTTTTTTTTTTTTG
TATGCAGAAATGTTCTGACTTCTTTCTCCATGTTGGATTCTTTGGCATAT
GTGAAGGTGATGTTTTGAGGAGTTGCACAATACCCCAGGCTGGACAAGGC
AATCCTTACAGATCCCATTGGCATGGCTACACGGTAAACCTAGTAACCGT
GCTCCTAGAGCCATGCCAAAATTATAGTCCTCTGAAACTTCTGCAGAAGG
ATTTAAACAGCTTTGTGTTCTGCCACCAAAATGTGTGTTCATTTTTCTAC
ACCTCCTACATCTGGCACTATTTCAGCCCAACATTTGCTGCAGTATTTTG
AGTTCGTCTTGTTCACCTTTTTCCCCCTGATGTACATTTTACGTGAAGAA
CTGAACTCATCACGTCCCCCACATTCTGCCGCCGCTCTACCCCCGCCCCC
AAATCATACTCCTCTCCCTCAATATGTCCGCCGAGGGAACATGGACCTCC
TGTTCCACAACCCTTTTCTCTCTCCCCCCCCCCATTTGTTTGTCCTGCCC
TCAACCTTTTCCGCCCTCATTTTCCTCCTTCTCCCCCCACCTCCCAACAT
TCCCTCATTCCCCTCCCCCCCCCACTAAACGCCCACTCCCCGATAACACC
CCCCCTCTCCACTCTTCCTTTCCCCCCTCCTTTATATTTACCTATTCCCA
CCCCCTTCTCCCCGTCCTCTTCCTTTTTCCTCTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m19.g1 MSMg01no391_m19.g1 CHROMAT_FILE:
MSMg01no391_m19.g1 PHD_FILE: MSMg01no391_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:08 2005
         (246 letters)



>mm_chr19_28166794_28167443
          Length = 650

 Score =  445 bits (230), Expect = e-129
 Identities = 242/248 (97%), Gaps = 4/248 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcacaccttctgtgttgg----tttttttttttttgtatgcagaaatgttctgacttc 56
           ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||
Sbjct: 448 attcacaccttctgtgttggtttttttttttttttttgtatgcagaaatgttctgacttc 389

                                                                       
Query: 57  tttctccatgttggattctttggcatatgtgaaggtgatgttttgaggagttgcacaata 116
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttctccatgttgtattctttggcatatgtgaaggtgatgttttgaggagttgcacaata 329

                                                                       
Query: 117 ccccaggctggacaaggcaatccttacagatcccattggcatggctacacggtaaaccta 176
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcccaggctggacaaggcaatccttacagatcccattggcatggctacacggtaaaccta 269

                                                                       
Query: 177 gtaaccgtgctcctagagccatgccaaaattatagtcctctgaaacttctgcagaaggat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtaaccgtgctcctagagccatgccaaaattatagtcctctgaaacttctgcagaaggat 209

                   
Query: 237 ttaaacag 244
           ||||||||
Sbjct: 208 ttaaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 650
Length adjustment: 9
Effective length of query: 237
Effective length of database: 641
Effective search space:   151917
Effective search space used:   151917
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)