BAC Information

Click to search

BAC

Clone NameMSMg01-391O07
Chromosome19 (Build37)
Map Location 46,727,992 - 46,728,178
singlet/doubletsinglet
Overlap geneD19Wsu162e
Upstream geneFbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2
Downstream geneCyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391O07.T7 (MSMg01no391_o07.b1)MSMg01-391O07.TJ (MSMg01no391_o07.g1)
ACCAG493557AG493558
length764769
length of high quality
(start - end)
57 (245 - 301)187 (107 - 293)
definitionCHROMAT_FILE: MSMg01no391_o07.b1 PHD_FILE: MSMg01no391_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:15 2005CHROMAT_FILE: MSMg01no391_o07.g1 PHD_FILE: MSMg01no391_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCCTAAACGACCCCCCTATTCACCACCCCCGCGGAANCNNNAGNATT
CCCACACACGCCAGANCCCCAAAAGAGCAGTGGAGAGGCCAGAGNAGGGN
ACAGTTCTAGAAGCCATGCCTCTCCAACAGCCGGGAGAACACCACAACCC
GATGATGGTGATCATGGGATTCTGGCCAAGTGTGGGGAGCAAATGCCATG
GTGAGGAGAAGACATGAGCTCTAGGGCCAGCAAGATTTCTCTGTCACTCT
GTGACATGCAACAATGTACACCACAGCTGTATTAATGCTAAGATTATTGA
GATTTAATAATTTAATTTTTCTTCACAAGGAAACTCAAAGATCCTTATAC
TAAGTCGCCAAACCACAGCAGAGCTACAGTCTGAGAACGAACTAAGCCCN
ACCGACCCCCCCCCTAGTCTCAAGAGAGTAACTAAGGAGAGCTGGGCATA
CGTCAGCCATTGATGCTCTATGCTCTAGTCAAGCGCGAACAGCTCCCCGG
TGAGCTGCCCCGCCGCTCACAGCCCTGATCCTTTCATCTTCTTTGCATGC
CGAGATAGCACCAGAGACCCCCCCCTATCCCCACCATAAGACCGCCCACT
GCTTGCCTGCCCGCCTGACACCCGCGCCTCCGCCCCCCCTGTTTTCTTTA
CCCCTATTGACCCCTGGGATTCCCACGCCCTTTCTGGCTCACCTCCGGCT
GTGCCCGCCCTCCTTCTTTCCCCCCCCCCTCTTCACCCCCTCCCCCCTTC
CCCCCCTTTTTCCN
NCCCGATGAAGTGTGAGGNCTGGNGGNCGCCCGCTGNTCATTTCAGGNGN
AANANAGAATTTTCACCCACCCGCCCNCCCCNGNCCCCNCAGGAGAACCA
GGGANGCCCAACCAGGCATCTCGCCTTAAGCCATTTGTCACATTGTACAG
ATTGTGATGTGACAAGTGTGTGCCCTTCCCTAGCTGGAAGGCTTTGTAGT
AAATGCTCAATAAACGTTAGCAGCTGCTGCACAGCTCTAAGCGAGGTTTT
TTTCCCCAAGGTACTGAGCGCATGCAGTCAGGAGGGGTCTCACCTGGCAT
GTTTTCAGNGAACCTTTTTTATTTATGCACCACACCCCNCCCNGACCGGC
GANCAAATCTTACCACCATATGAGCGAACTGTGCTGAGGTCTCACAGCAT
AACGACGGTTGACCCCCCCTGCCCTAAGCTGCTGCAGTCCCCCCCATTGC
TCACAGCTAATACCCCCACCCCCTTCGCCTCCGCCTTGTCTAGGCCCACG
TGCCCCCCCCCCCGACCTCTGCTAGACGTGCCACTTCTCCCACACCCCTT
TCCCCTCCCCCCCCGCTTCTGTTTTTCTCCCATCTTCCTTTTCCCCCCCC
TCTTCCCTCCTTCCCCGTCGCTTCCCTTCTCCCCATCTCCCCCCCCCCTT
CTTTTTTTTTCCCCCCAACACTCCCCACCCCCCCCCCCCCCCTTCTATTC
CCCCCCCCCCTCTCTCTTCACCCTCCCCCCCCCTTACCCCCCTCCCCTCC
CTTTTACCCCTCTCTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_o07.g1 MSMg01no391_o07.g1 CHROMAT_FILE:
MSMg01no391_o07.g1 PHD_FILE: MSMg01no391_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:15 2005
         (187 letters)



>mm_chr19_46727792_46728378
          Length = 587

 Score =  292 bits (151), Expect = 8e-84
 Identities = 178/187 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaaccaggcatctcgccttaagccatttgtcacattgtacagattgtgatgtgacaag 60
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cccaaccaggcatctcgtcttaagccatctgtcacattgtacagattgtgatgtgacaag 260

                                                                       
Query: 61  tgtgtgcccttccctagctggaaggctttgtagtaaatgctcaataaacgttagcagctg 120
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtttgcccttccctagctggaaggctttgtagtaaatgctcaataaacgttagcagctg 320

                                                                       
Query: 121 ctgcacagctctaagcgaggtttttttccccaaggtactgagcgcatgcagtcaggaggg 180
           |||||||||||||||||||||  |   |||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcacagctctaagcgaggtgatccgccccaaggtactgagcgcatgcagtcaggaggg 380

                  
Query: 181 gtctcac 187
           |||||||
Sbjct: 381 gtctcac 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)