BAC Information

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BAC

Clone NameMSMg01-392B01
Chromosome19 (Build37)
Map Location 49,951,073 - 49,951,484
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629448, Siah1-ps1
Downstream geneEG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392B01.T7 (MSMg01no392_b01.b1)MSMg01-392B01.TJ (MSMg01no392_b01.g1)
ACCAG493689AG493690
length753743
length of high quality
(start - end)
578 (49 - 626)420 (76 - 495)
definitionCHROMAT_FILE: MSMg01no392_b01.b1 PHD_FILE: MSMg01no392_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:28 2005CHROMAT_FILE: MSMg01no392_b01.g1 PHD_FILE: MSMg01no392_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGACCTGGCTTTTAATATTTATGTTTATACCTATCGATTAT
TGCTACATTTGGCCTTTGTTGTTAAAATTACATTTTTGAGGTGGGTTGAG
TTACAAGTTGTCAAAGAGCTTACAGTAAGTGACTGTGAAGCACTGTACAG
TAGAGAAATCTTAATCCAGCAACATGGCTGCCCTGTCAAAGGATCCCATC
CAAATAACTTCTAGGTCTTTGTGATCCAACTGGAATGGTCCACCTTTAAT
CCCTCTGGCTGAAATACAGACACACCCTGCCCGTAATACATTGCTTTGAT
CCCAGGCAATGAAGGTAAATTTAGCTTGTACAAGGAAGCAACCATGTTTG
AAAGTGACTTTTAATTGAGGGACAAAGTGAGGGCTCAGAGAATGAGTCAG
AGATACACTCAACTCTCATAGGAACAGACAGAAAGGAAAGGCTACTTAAG
ACGAGCATGCATGAGTCAGGGTCAGAGGTCAGTTCAGTGAGTGCAATTCA
TTTCATTTCTGGGCTGTTCCACTCAGTTCAGTCAGCTTGGGGGGAAGTTT
TGAGTTAGAACAGCCGAGTTGAACTAGCACCCACCCACACTACCCCCAAG
TTCAGCCAGAACTAAACCAGTTGAGCTTTTTCAGCACAAAGTCTCCGAGG
CTGAAACATTCTACACCTATGTTTGCCCATGGACGCTGGACGCTGACACC
CCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCATGTGTCAGAATGTTTTCAGT
ACAACAAAGCTGTGTTTTAAGGTAAGATTTAATGAAGACATTTTCATAAT
CAATAAGACATTTTGCTGGGTTTTTGTTTGTTGGTTTTTTTTTTTGCTGT
TGTTCTCATTTTACCCATTATTGTATCCATGTAAAATTAATAAAAATGTT
ATTAATATAACAGAATGGAAAAGCCTCAGAAAATTCAAAAATTAGCACTA
TAGATTTAAGAAAATATTTATGATGTAAGTAAAAAAACATAATTGGAAAA
TGAAAAAAATACCTGTTATATTTAGTGCAATTTATTTAATACTGTGCAAC
ATAAATATCATGTATGTGACAGACATTAACATTAAAGCTATATAACTGTT
AATAAGTATTACAAAAAATGAATTACCTAAAGACAAAATGTTCAGTATTT
TTAATTGGCTTTATATAATGTATCCATAGTTTCATAATTCTGTGGTTACA
CTGTATCATACTACCCGCAATATACTTCCTAATGGCTTTTAATCTGCGAA
TATAACCTATCATAATTACTTTGCACTTGCAACCTTTATTCCACTTTTAC
TGCCTTTATGAGACTTACCCTCCCACTTCTGATGATTCTCCCTATTCCTA
TTTACCCGCCCCTAAGCCTGTCTTTAATGTTCTTTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_b01.g1 MSMg01no392_b01.g1 CHROMAT_FILE:
MSMg01no392_b01.g1 PHD_FILE: MSMg01no392_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:28 2005
         (420 letters)



>mm_chr19_49950864_49951684
          Length = 821

 Score =  685 bits (354), Expect = 0.0
 Identities = 402/422 (95%), Gaps = 12/422 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatgtgtcagaatgttttcagtacaacaaagctgtgttttaaggtaagatttaatga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 210 tttcatgtgtcagaatgttttcagtacaacaaagctgtgttttaaggtgagatttaatga 269

                                                                       
Query: 61  agacattttcataatcaataagacattttgctgggtttttgtttgttggttttttttttt 120
           ||      | || |||||||| ||||||||||||||||||||||||||   |||||||||
Sbjct: 270 ag------taat-atcaataaaacattttgctgggtttttgtttgttg--attttttttt 320

                                                                       
Query: 121 gctgttgttctcattttacccattattgtatccatgtaaaattaataaaaatgttattaa 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgttgttcttattttacccattattgtatccatgtaaaattaataaaaatgttattaa 380

                                                                       
Query: 181 tataacagaatggaaaagcctcagaaaattcaaaaattagcactatagatttaagaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataacagaatggaaaagcctcagaaaattcaaaaattagcactatagatttaagaaaat 440

                                                                       
Query: 241 atttatgatgtaagtaaaaaaa-cataattggaaaatgaaaaaaa-tacctgttatattt 298
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 441 atttatgatgtaagtaaaaaaaacataattggaaaatgaaaaaaaatacctgttatattt 500

                                                                       
Query: 299 agtgcaatttatttaatactgtgcaacataaatatcatgtatgtgacagacattaacatt 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 agtgcaatttatttaatactgtgcaacataaatatcatgtatgtgacagacattaaaatt 560

                                                                       
Query: 359 aaagctatataactgttaataagtattacaaaaaatgaattacctaaagacaaaatgttc 418
           |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct: 561 aaagctatataactgttaataagtattagaaaaa-tgaattacctcaagacaaaatgttc 619

             
Query: 419 ag 420
           ||
Sbjct: 620 ag 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)