NNNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATATTGGATAT
TAGTCCCCTATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGCCTTTTTGCCTTATTGACGGTGTTTTTTGCTTTGCAGAAGCTTTGC
AATTTTCCATTTTCATATTTTTAAATAAAAAAACTTAGGCAAAAGATTCT
GATCATGCTTCCCTTATCCCCAACTCCACCCAGATTCCCCATCTCTCCTT
CAACGCAATTCTACTCCCTTCTCTCTATTTAAAAAGTACACACACACAAA
AAAAACAAGAAATACATATAAAAAACCATGAAAACCAAAATATGTAAACA
AAAAACAAGTAAGATAAAAGAAAAAAAAAACACCCAAATGAAACATGAGA
CAAACATATCATTGAGTTCATTTTGGGTTACCCATTTACTCCTAGACATT
GTGCCTACCATGAGGTTTGATTAATATACCAGGAATACTCCTTTGAAAAA
TTAATTTTTCTTTTGCCAGTCGACATCAATTGCAGATAGTTTCTTGGCCA
CCTCCCTGTCTTAATATTGGCCCCCCTATGGCTTAAACCTGTGCTTGCTA
TTCTTGGACATCAGCCCCATCATTCCCTGGAAGAACTGTTTTCTTTGGAG
C

NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCACAAATGTTTGGTGTCTA
TGTGTTTAGGGTTGCAGTGTCTTTTTGGCTGAATTGTTCCCTCGATGACC
CCTCTGGTTAGTTTTGGTTTGATTTCTATTTTATTAGATATTAGGACAGT
GCCAGCTGTTTTCTTCCTGACCTCTTTTGCTTGGAATACTCCTTTTCTTC
TATTTACATTAATACAGCACCTATCTTTGAAGGTAAACTGAGTTCCTTGT
AGAAAACAGAAACTTGGATTTTGTTTTCTAATGTAGCCCACTATCCTTAG
GTAAATGAGGAGTTTACTATTATTGTTATTTTGCTATTTGTATTCTTAGC
CCTACTTTGTGTTTCAGCAATTACATCTTTGTTATTTTTAATGTAATCTC
TTGGATGCTTGTTCCTATCTTCAGTCTGCACTATGGCTTCCAGAATTCTC
TGTTAGCTGATTTGATGGACATGTAATATTTTTTTTAACATGTTTGTACC
TTGGAAAGTGGTTCCTTCCTCTCCAGATGGGAGAATAGTCTTGCTGCTGC
AATGTCCCCTCTTTGGCCCCTATGACCCTTTTACACCTTGAAGGAGGGTA
CTCCCCCTTTTTCTTCTAATCCCTTTCATTAAGAGCCCCCCATCTTTTTT
TTAAATCTCCCCTTGCCTTTCTCCTCTCCCCCACCGCTTCTGGGCGTTTT
TTTCCCTTT

Query= MSMg01no392_l06.b1 MSMg01no392_l06.b1 CHROMAT_FILE:
MSMg01no392_l06.b1 PHD_FILE: MSMg01no392_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:19 2005
         (548 letters)



>mm_chr19_19094821_19095767
          Length = 947

 Score =  992 bits (513), Expect = 0.0
 Identities = 538/549 (97%), Gaps = 7/549 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtttagctctgagccccattttttaatggggttatttgattttctggagtc 64
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 764 gaattctttgttcagctctgagcccca-tttttaatggggttatttgattttctggagtc 706

                                                                       
Query: 65  caccttcttgagttctttatatatatattggatattagtcccctatctgatttgggatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 caccttcttgagttctttatatatatattggatattagtcccctatctgatttgggatag 646

                                                                       
Query: 125 gtaaagatcctttcccaatctgttggtggcctttttgccttattgacggtgttttttgct 184
           ||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||
Sbjct: 645 gtaaagatcctttcccaatctgttggtggcctttttgtcttattgaaagtgttttttgct 586

                                                                       
Query: 185 ttgcagaagctttgcaattttccattttcatatttttaaataaaaaaacttaggcaaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttgcagaagctttgcaattttccattttcatatttttaaataaaaaaacttaggcaaaag 526

                                                                       
Query: 245 attctgatcatgcttcccttatccccaactccacccagattccccatctctccttcaacg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 attctgatcatgcttcccttatccccaactccacccagattccccatctctccttcaacg 466

                                                                       
Query: 305 caattctactcccttctctctatttaaaaagtacacacacacaaaaaaaacaagaaatac 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 465 caattctactcccttctctctatttaaaaagtacacacaca-aaaaaaaacaagaaatac 407

                                                                       
Query: 365 atataaaaaaccatgaaaaccaaaatatgtaaacaaaaaacaagtaagataaaagaaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atataaaaaaccatgaaaaccaaaatatgtaaacaaaaaacaagtaagataaaagaaaaa 347

                                                                       
Query: 425 aaaaa-----cacccaaatgaaacatgagacaaacatatcattgagttcattttgggtta 479
           |||||     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaaaaaaaaccacccaaatgaaacatgagacaaacatatcattgagttcattttgggtta 287

                                                                       
Query: 480 cccatttactcctagacattgtgcctaccatgaggtttgattaatataccaggaatactc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cccatttactcctagacattgtgcctaccatgaggtttgattaatataccaggaatactc 227

                    
Query: 540 ctttgaaaa 548
           |||||||||
Sbjct: 226 ctttgaaaa 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space:   504106
Effective search space used:   504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)