XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGA
GATCTCCCTCCCAAGTGCTGGGCTTAAAGGCATATGCCATTGTGCCCACT
TTAGGAGATATTTTTATATTTTTATAATCTTGAATTTCCTTATCCAAGAA
CATAATTCATTTTCTGTGTATGCAGATAATGTGTTACATTGTACAAGAGT
ATTTTGAAACTTTTAACAATCATTTTCAATTTTTTGGTTAAGTTTAATTC
AACATAGGGCATTTTTCTTGCTGCTATAAATAGGGCTTTTTTAAAAAGCA
TTCAATTACATTGATTATTTTGATAAATGGAAAATAAGTACTTTTTAAGT
ATGTGTGCTTTTCTATTAGATAAAGTGACACATTTTTATTATATGTTCAT
ATGTATATATTTTAATAAAAAAAATCTCAGCATACTTCCATATCCTAACA
CATGTAGTTTAGTCTGAGCAGTATATAAAAATAAATGTTTGTATTTATAA
TTAATCTCAACTTTTATGTATGTATTAGATTCTGACTAACTCTCTCAGGG
TCATTGAAGTGTATAGTTATGAATGGTTAGTGACTAACTGGGAAGGTGAC
CTAAGCCTGTCGTTGGGAGGGTCTTAACATATCAGATAGAAGGATTTGTT
AAATCATGCTAGGGAACTAACTGGAAGTTATACAAAATATTTGAACAATT
TAGAGGACATTAACCCGAATAGAGTAGAGAGAATTTCCAACATTAATATT
TAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGAGTCTTTAATTTCTTTCTTTATTTCTT
CCCTGACCAAGTTATTGAATAGAGAGCTGTTCAGTTTCCATGGATACCTC
AATCCCACTTGGGAAAGAGAAGAAAGCAATTGGGGGTGGGGATGGGATCT
GGGTGGGAAAGGTGACNGNNNNNNNNNNNNTGTTTTTTGTNNNNNNNNNT
TTTTTTTTTTGTCGTTTTTTTCGGTTTTTTTTCTTTCTGTTTTTTCGNNT
TTTTTTGGCGGCTTTTTGGTTTCGTNNCNCTCTCTGTTTTTTTCGTATAT
TTTTTTCGCCTCCTTTCTTGCCCCATCTCCTTCTTTTTTTCTTTTTCTTT
TTATTTCCCCCCCCCCCCCCCCCCCCACATATTTCNCCCTATCTCCCTTT
TGTTTCTTTTTTGCTCTTTACATTTATTTTCTCTTTTTTTCTACNCNNNN
NCATAATCACTTTCTTCTCCTCTCTCTCTTCTCCTCCTGCNAGTGTTTGT
TTTCCGTTTTGTTTGCGTTTGGCNGGCGGGTGTTCTTCTGTTTCTTTTTT
TTGTGTCTTTTTTCNCATTGTGTTGGTTGGTTCGNGGTTTTTTCTTTATT
CGACGTTTTCTTTTTATCTGTCTTGANTTGATTTTTAGTTTCGTTCTTGT
TTTTTAATCCCATTTCTTTGTTTTTTTTTTTCGTNNACTTCATTCTCTTG
CCTTCAGCCCTCTTTTATTTTTTCCGTTTTCACCTTTTCTTTTTTATACC
CCATTTTTTTTTACTTATTCTTTTTCTTTTCG

Query= MSMg01no393_f02.b1 MSMg01no393_f02.b1 CHROMAT_FILE:
MSMg01no393_f02.b1 PHD_FILE: MSMg01no393_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:12 2005
         (557 letters)



>mm_chr19_29358367_29359323
          Length = 957

 Score = 1058 bits (547), Expect = 0.0
 Identities = 553/555 (99%), Gaps = 2/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagagatctccctcccaagtgctgggcttaaaggcatatgccattgtgcccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacagagatctccctcccaagtgctgggcttaaaggcatatgccattgtgcccac 262

                                                                       
Query: 65  tttaggagatatttttatatttttataatcttgaatttccttatccaagaacataattca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttaggagatatttttatatttttataatcttgaatttccttatccaagaacataattca 322

                                                                       
Query: 125 ttttctgtgtatgcagataatgtgttacattgtacaagagtattttgaaacttttaacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttctgtgtatgcagataatgtgttacattgtacaagagtattttgaaacttttaacaa 382

                                                                       
Query: 185 tcattttcaattttttggttaagtttaattcaacatagggcatttttcttgctgctataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcattttcaattttttggttaagtttaattcaacatagggcatttttcttgctgctataa 442

                                                                       
Query: 245 atagggcttttttaaaaagcattcaattacattgattattttgataaatggaaaataagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atagggcttttttaaaaagcattcaattacattgattattttgataaatggaaaataagt 502

                                                                       
Query: 305 actttttaagtatgtgtgcttttctattagataaagtgacacattttt-attatatgttc 363
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 503 actttttaagtatgtgtgcttttctattagataaagtgacacatttttgattatatgttc 562

                                                                       
Query: 364 atatgtatatattttaataaaaaaaa-tctcagcatacttccatatcctaacacatgtag 422
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 atatgtatatattttaataaaaaaaaatctcagcatacttccatatcctaacacatgtag 622

                                                                       
Query: 423 tttagtctgagcagtatataaaaataaatgtttgtatttataattaatctcaacttttat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttagtctgagcagtatataaaaataaatgtttgtatttataattaatctcaacttttat 682

                                                                       
Query: 483 gtatgtattagattctgactaactctctcagggtcattgaagtgtatagttatgaatggt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtatgtattagattctgactaactctctcagggtcattgaagtgtatagttatgaatggt 742

                          
Query: 543 tagtgactaactggg 557
           |||||||||||||||
Sbjct: 743 tagtgactaactggg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)