BAC Information

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BAC

Clone NameMSMg01-393G04
Chromosome19 (Build37)
Map Location 5,614,686 - 5,615,268
singlet/doubletsinglet
Overlap genenone
Upstream genePcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip
Downstream geneRela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393G04.T7 (MSMg01no393_g04.b1)MSMg01-393G04.TJ (MSMg01no393_g04.g1)
ACCAG494696AG494697
length772780
length of high quality
(start - end)		587 (33 - 619)418 (62 - 479)
definitionCHROMAT_FILE: MSMg01no393_g04.b1 PHD_FILE: MSMg01no393_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:18 2005CHROMAT_FILE: MSMg01no393_g04.g1 PHD_FILE: MSMg01no393_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTTGGT
TATCTAAAGGAAACACAGCCAAGCATCCTTGTGCCTGTTAAGTGGTTGGT
TTACTTTGCATGTGATCCACCTGAATTCCTCGGCCCTGGGAACCAGCCTC
TGGGCCCATCTCCAGCACAGTAACAATAGCCAATGTTTATTGGGATGGGC
TGTGTGCCAAATGTTGAGGTATATACTGTTGAAATGTCAACAGGCATCTA
ACACTACAGCCACTCTTTATAGTACCACTAAAATCACACCATTATAGGTC
AGATAAAAGTGACAGGCCAGGTACACAGCTTAATTGGGGAGAAGGGGAAG
GCGACCCAGTGCTGTCAGTCCTGATTAATTTTAAGTAGTCTGTCCCGACT
AGTGTTACAGGTAGTTGTGTGTGCTGGAAACTAAACTTATTTTCTCTACG
GAAACAAAAGCTTGCACCATTTGAGAAGAGGTACTCTTCATAAGATTTGT
CTGTAAGGCCAGGCAGTGGTGATGCACACCTTTAATCGCAGTACTTGGGA
GGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGT
GAGTTCCAGGATAGCCAGGGTTATACAGAGAAACCCTGTCCTGGAAAAAC
AAAACAAACCAAAACCAGCCCCAACCCAAATCAAACAAAAACCAGATTTG
CCTGGAATCAAGTCCTGAAGTGTATTCTTCAAATTAATGATTTGAGGTGG
GAAAGGCCCCATGCCATTTGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATGACAGCTAGAACTATGAAGATGAACCCTGTCTTTAA
AAACAACAGCAACATAAAGAATCTATGTAGGGAAGCTGGAAGGGATGCTG
ATACAGTCTGCAATCCTATTACTCTAGAGGTGGAAGCCAAAGAATCAGGG
GTTTCAGGCCGGTCTTGCCTATACACTGAGCTAAAGGCCAGCCTGGGACA
CATGAGACTTTGTCTCTTTTAAAAAGACAAAACAAGGGGGTTGGTTAGAT
GGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCTGCAGGTCCGAAGTGTC
AAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAAATCTGA
GTCCCTCTTCTGGAGTGTCTGAAAACAACTACAGTGTACTTACATATAAT
AAAAATAAATAAATCTTAATAAAAAAAAAAAAAAAGAGTAAACAAGCCAG
ATGAGGTCTGTGAGTTCCAGGCCAGCCTGGTCTATAAATCAAGTTCAAGG
CCAGGCAGGGCTACTCAGAGATTCTGTCTAAAATACCAAGAAACCAAACT
ACCATAAGCAGAAAAAGGAATCTACGAAAGGGCTGGCGAAGGGGTGGAAA
CTCAGTGGTATTACATTTTGCCGAGCTATGCTGGACTTAGCCTTGGGTTT
TGATCCCCTTTCCCCACCCCCACCAAAAGTCCTCACTAGGTGCTTTGTTT
GCCTATATTATATTGATTTCCTGATGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_g04.b1 MSMg01no393_g04.b1 CHROMAT_FILE:
MSMg01no393_g04.b1 PHD_FILE: MSMg01no393_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:18 2005
         (587 letters)



>mm_chr19_5614594_5615580
          Length = 987

 Score = 1035 bits (535), Expect = 0.0
 Identities = 571/583 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttggttatctaaaggaaacacagccaagcatccttgtgcctgttaagtggt 64
           ||||||||||||| ||| ||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 675 gaattcactttgggtatttaaaggaaacggagccaagcatccttgtgcctgttaagtggt 616

                                                                       
Query: 65  tggtttactttgcatgtgatccacctgaattcctcggccctgggaaccagcctctgggcc 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 615 tggtttactttgcatgtgatccacctgaattccttggccctgggaaccagcctctgggcc 556

                                                                       
Query: 125 catctccagcacagtaacaatagccaatgtttattgggatgggctgtgtgccaaatgttg 184
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 555 catctccagcacagtaacaatagccagtgtttattgggatgggctgtgcgccaaatgttg 496

                                                                       
Query: 185 aggtatatactgttgaaatgtcaacaggcatctaacactacagccactctttatagtacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggtatatactgttgaaatgtcaacaggcatctaacactacagccactctttatagtacc 436

                                                                       
Query: 245 actaaaatcacaccattataggtcagataaaagtgacaggccaggtacacagcttaattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actaaaatcacaccattataggtcagataaaagtgacaggccaggtacacagcttaattg 376

                                                                       
Query: 305 gggagaaggggaaggcgacccagtgctgtcagtcctgattaattttaagtagtctgtccc 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 375 gggagaaggggaaggcgacccagtgctgtcagccctgattaattttaagtagtctgtccc 316

                                                                       
Query: 365 gactagtgttacaggtagttgtgtgtgctggaaactaaacttattttctctacggaaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 315 gactagtgttacaggtagttgtgtgtgctggaaactaaacttattttctctacagaaaca 256

                                                                       
Query: 425 aaagcttgcaccatttgagaagaggtactcttcataagatttgtctgtaaggccaggcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaagcttgcaccatttgagaagaggtactcttcataagatttgtctgtaaggccaggcag 196

                                                                       
Query: 485 tggtgatgcacacctttaatcgcagtacttgggaggcagaggcaggtggatttctgagtt 544
           ||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tggtgacacacacctttaatcccagtacttgggaggcagaggcaggtggatttctgagtt 136

                                                      
Query: 545 cgaggccagcctggtctacagagtgagttccaggatagccagg 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cgaggccagcctggtctacagagtgagttccaggatagccagg 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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