BAC Information

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BAC

Clone NameMSMg01-393M16
Chromosome19 (Build37)
Map Location 13,987,366 - 13,987,934
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504
Downstream geneOlfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393M16.T7 (MSMg01no393_m16.b1)MSMg01-393M16.TJ (MSMg01no393_m16.g1)
ACCAG495002AG495003
length7701,750
length of high quality
(start - end)		573 (36 - 608)---
definitionCHROMAT_FILE: MSMg01no393_m16.b1 PHD_FILE: MSMg01no393_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:54 2005CHROMAT_FILE: MSMg01no393_m16.g1 PHD_FILE: MSMg01no393_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGG
ATCATTATTCAGCTCCAGGGATGCCAAAGGACTCCAGGGAGAAGCTGCTC
CTCTAGAGAGAACACATACCCGAAGAGACAAGACTCATTATCACATCTTC
TCTATACATCCTAAGGGATAAAAGAAAACATTTTGGGGTTTTATGACTAC
TCCTAAGCTGTTAACACTCAGAACTCAATAGCAGCTCCTGCTGTAGTACA
CTTGTTTTTTGTCACTGACCATCATATTCTGGCTGAAATTAGTCAGGGAT
AATAGTGGAACTGTAACTCAGATCTGGGGATTTTAAGTGAATGTCTTTTT
TTGTAATATAGAATTTCTTAGTCCTCATGTGGCTTTTTGGCCCTAAAAGT
CACTTTCAATGTTTTATTAGAATTCCACAAGGAAGCATGTTTACTTACTC
TTAGGAGTAAGTCTGGCATGTGGCCTGAATATAACTCATTTGCTTCTGTA
CCTAGTTGATTACTAGCTCATCATCCTTCAAGATCCACTTCCAAGGTTTC
TATGTTACACTTACTGTATTGCAGNTCTCATCTTATCACCATATCTACCA
CTTACAGTATCCATGTTAGAAGAATAAAATTTGAGTTTCTGAGGGGTTTG
TGCAGGGGCCAGTGATTATCCAAGCAGAAACTCTATCTTGAGAACGGGAG
AAAGGAAGTATCATGGGAAGGCTCCCCCCCCATTGGGACTTTTAATTATG
GCTTTGCCCAACTTTTGGCA

CAATCTTNAATAAATAAAACNTCTGCGCTGCGTACTGTCTGTATCTGGTA
TCCATGTGACGAGGAGGCGCCCGACGACCGCACAAACTCGACGCGNCACT
NCTCCTGCTCGCTNTNACCACGACGTTATGCACAGTAGAGTGGAGTAGAG
AAGTAAGAGGGAATTACTCTTCGTAAACTACTACCCTCCGTGCTCCGCTT
TNATGACGTCGCGACTCATATTTGTAGCGATGGGCGAACACGCTACAGTC
GCTACCATCACACTGACTTCTCCTCTATACGACGCAGAGAGTGAGCTATC
AACGATCGTCTATCGCGTGCTGATATATATNATACTATGCTTACTAGTGT
CACATCANTATCGCTGCCTTACTCGCGCGACNTGTCGTGTACACCNGTCG
CCCGAGTCTAGCTAGCACGCACGCACGTGACTATCTGTCTATTACACGTC
GANCGCCACGGCGATATCCATCCTACTANATGACTCTAGCACGTGANCGA
CGCGTCCGCCTGTGCGACAGCCAACGCCTACTATACTACACNTCGCCCAA
CAACACCACGAGAACTATCACACACCATCATGATACCAGAGTGTAGTCGC
GACGAGTGTCGACAGTATAGCTATACGCAATGTGGTCGTATTCACTCCCT
TATTCGCTCTCCNCGCTCTTGCATCTGTCCGTCACTCAAGTTGTGCTCGC
TCCGCGATGCTGTGCGCGTCTGTANCTTAGTGTCTGAGTCACCACTGCAA
CGATCGCATGACTACGCTCACTATNATAACGTTCCATACATACATTTTAT
TGACAACAATCTATAGTCGCGNATATGATATTATCGCAGAAGATACGCGG
AGTAGATCGGCTGTATGTAGTCGCGCGTATGAGCTCAGTAGTGCCTGTAG
TTCTGGATAGTAGTGGAGAGAGGAGTGAGTAGAGCAGACAGACGAGTAGA
CGATGTCACGTATCTCTCATATCTGCTACTATCGAGCATATACCTACATA
CAATAATCGACATCGTTGATAGACTCAGCTGTCGCGCTGCCTGCGTCTTG
TCCGCGACACTACACTCNCTGTGTACCACACACTCTCAGTATATATTGTA
TGTCAGACATCGACTGAATAGGTGCTGATTCGTGACGCTGTATCTANCNG
CAGTGATCACTCGANAGTCGATCGTCCTTAAGTNTAGATNTTCATCGCGC
TCGATGTGATACGCATGTGATCGCGGTGATCGCGACGGATATTACTGCAT
CCGNGATACTCGCATGCTNATGTGACATAACGCCTATAGTACACGACGCT
ATAAGCATCGCAACCGCTGGTATCTCACGCATTTCGACATACTATCAATC
GACTATCTAATACCACTACACTCACTCAACGCAGAGTCACTCTCGTCCAC
GCTTACTCGATCGTCTGTCTATCTAGTACTGTGTTAACNCTGTGCATCTT
TAGANGCGTGGTGAGAGACCACACAGAGCAGTAACGCGAGATANCCGCTC
GTTATGTACTGTCCCACATCTTCGCCATAGACTAGTAGTGCTGATATAGC
ACGCGTCACCATCTAGTGAACAGNANTGGCGACGCGCTATACAGTGCATA
GATNGCAAGACAACGCGACCGCACGCACNACGACAGAGATGAGTTGAATG
ATATGATTACTGCGCTCTCCACTCTCCGTCGTATTGAGTCCGAGCCAGAC
GCTCGTGTCCTCGCGCACCATTGTGATACAGAACTGATATAGGCGTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_m16.b1 MSMg01no393_m16.b1 CHROMAT_FILE:
MSMg01no393_m16.b1 PHD_FILE: MSMg01no393_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:54 2005
         (573 letters)



>mm_chr19_13987162_13988134
          Length = 973

 Score = 1079 bits (558), Expect = 0.0
 Identities = 566/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggatcattattcagctccagggatgccaaaggactccagggagaagctgct 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 773 gaattctctggatcattattcagctccagggacgccaaaggactccagggagaagctgct 714

                                                                       
Query: 65  cctctagagagaacacatacccgaagagacaagactcattatcacatcttctctatacat 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cctctagagagaacacatatccgaagagacaagactcattatcacatcttctctatacat 654

                                                                       
Query: 125 cctaagggataaaagaaaacattttggggttttatgactactcctaagctgttaacactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cctaagggataaaagaaaacattttggggttttatgactactcctaagctgttaacactc 594

                                                                       
Query: 185 agaactcaatagcagctcctgctgtagtacacttgttttttgtcactgaccatcatattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agaactcaatagcagctcctgctgtagtacacttgttttttgtcactgaccatcatattc 534

                                                                       
Query: 245 tggctgaaattagtcagggataatagtggaactgtaactcagatctggggattttaagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tggctgaaattagtcagggataatagtggaactgtaactcagatctggggattttaagtg 474

                                                                       
Query: 305 aatgtctttttttgtaatatagaatttcttagtcctcatgtggctttttggccctaaaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aatgtctttttttgtaatatagaatttcttagtcctcatgtggctttttggccctaaaag 414

                                                                       
Query: 365 tcactttcaatgttttattagaattccacaaggaagcatgtttacttactcttaggagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcactttcaatgttttattagaattccacaaggaagcatgtttacttactcttaggagta 354

                                                                       
Query: 425 agtctggcatgtggcctgaatataactcatttgcttctgtacctagttgattactagctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agtctggcatgtggcctgaatataactcatttgcttctgtacctagttgattactagctc 294

                                                                       
Query: 485 atcatccttcaagatccacttccaaggtttctatgttacacttactgtattgcagntctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 293 atcatccttcaagatccacttccaaggtttctatgttacacttactgtattgcagttctc 234

                                        
Query: 545 atcttatcaccatatctaccacttacagt 573
           |||||||||||||||||||||||||||||
Sbjct: 233 atcttatcaccatatctaccacttacagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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