BAC Information

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BAC

Clone NameMSMg01-394A04
Chromosome19 (Build37)
Map Location 59,006,846 - 59,181,089
singlet/doubletdoublet
Overlap gene6430537H07Rik, 4930506M07Rik, LOC668626
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a
Downstream geneVax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394A04.T7 (MSMg01no394_a04.b1)MSMg01-394A04.TJ (MSMg01no394_a04.g1)
ACCAG495168AG495169
length769792
length of high quality
(start - end)
408 (51 - 458)343 (83 - 425)
definitionCHROMAT_FILE: MSMg01no394_a04.b1 PHD_FILE: MSMg01no394_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:13 2005CHROMAT_FILE: MSMg01no394_a04.g1 PHD_FILE: MSMg01no394_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,006,846 - 59,007,247)(59,180,750 - 59,181,089)
sequence
CTATCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTTGGTGTACAAAGTCAAAAATTAGTCCTTGTTTCCTTA
GGGTCGCTGGACACTGCAACCCGTGTACACCCATGTCCCCTCTTGGCTCC
CAACCCTGAATATTATTCTTGAAAAGGTGCATGGATGTAAAATGACTCCC
ACAGAACCATGGGTAATTTGTTACTTACTCCCTCTTGTAGACTGCACACA
GTTATGAACGGGAAGCAGAGCATACCTACTTCCGGGTGTTAGGAAGCTCT
GAGACCTGTCGTGGGTGCACTGTGGATGCATGGGTAATAAATATAGGATG
AGATTCAAAAGTCCAGCTCCCAGAGGATGGGGACGGATGGGTGCTATACA
AAGCCTGGGCAGGAGACTCAAGCTTGCTTGTTATTAAAGAGGAGCAAAGT
CAATCACAAGGTTGTGGCAGAAAAATGTCTGTGATGATCCCTCATACAGA
ATCAAAGACGAAACCACCTTACTTTGAGTGCAGGACGAGAAAATATCTGG
TACTGTTCTTGACGAAATCTACTGAAAAGCGCATTCCCCTAGCTTCCCTT
TTCTTTTTCCTCCGCTCTCCCTTCCTTCTCTTACCTACTCCCATTCCTGC
AACTTCCTTTTCCTCTCCCCCCTCCCCCCTCTTCACACCTCCTCTCTTTC
CCTTTCCTACCCATCCACTTCTTCCTCCCGCTCGTTTCCCTCCCCTTTTT
CTCTCTCCTACTTCGATCC
TTTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTGGGTAGCATCTAG
CCTGGGGAGTAGAGTTTTAGAAAGCTGAGCATGCTAAGAACTGTGGATTG
TGTTTGTTAAAATGGACCAAAGGACTAGGCAAAGGAGAACAGGGACGTGT
ACGTGATATCAGGACACAGGCAGACACATTCATGGGTGCATTGGTTCTTA
GGAGGAAAAACTGATTTTTGAAAAAAAATTGTGGAAATTGATTTTCTTAA
AGCTCTCAACATTTGTAATTCCTATGGTGTGTCTTTTAAGTACCCTCAAA
GATAGTGAGTCTTGGATTGGTTATCAATGGTGTACTGATTATTTAGTAAT
TAAACATTAATCTAAATATATTGGCTTATGAGGGTTGGGCGTCGTGTTCG
TTTCTTTCCCTTGCTCTTTCCTTTTCCTTTTTTTCGTCTTCCTCCTTCCC
TCTCCTTATCTTTTCTCCTTTTCTTTTTGCTTTCCTCACTTCTTTCTTAC
TCTTTTCCCCCTTCCTCCCCCCCTTTTTCTTTCCCCCACTCCTTTTCCTT
CCTTTCACTCCTCCTTCTTTCTTTTTCCTCATTTTAACTCGCCTCTCCTT
TCGCCCCCCTTTTTTTTTCTAGCTCCTTACTCCATCACTGCCTATAACCT
TCGTCTCCCATACCGCACCCTTCCTCTTCCTTTCATACTTCACTACGCCT
TCTTGCACATATTTTCCGCTCTACTCTTATCCTATTTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_a04.b1 MSMg01no394_a04.b1 CHROMAT_FILE:
MSMg01no394_a04.b1 PHD_FILE: MSMg01no394_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:13 2005
         (408 letters)



>mm_chr19_59006642_59007449
          Length = 808

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttggtgtacaaagtcaaaaattagtccttgtttccttagggtcgctggacac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttggtggacaaagtcaaaaattagtccttgtttccttagggtcgctggacac 264

                                                                       
Query: 65  tgcaacccgtgtacacccatgtcccctcttggctcccaaccctgaatattattcttgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaacccgtgtacacccatgtcccctcttggctcccaaccctgaatattattcttgaaa 324

                                                                       
Query: 125 aggtgcatggatgtaaaatgactcccacagaaccatgggtaatttgttacttactccctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggtgcatggatgtaaaatgactcccacagaaccatgggtaatttgttacttactccctc 384

                                                                       
Query: 185 ttgtagactgcacacagttatgaacgggaagcagagcatacctacttccgggtgttagga 244
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 385 ttgtagactgcacacagttatgaacgggaaacagatcatacctacttccgggtgttagga 444

                                                                       
Query: 245 agctctgagacctgtcgtgggtgcactgtggatgcatgggtaataaatataggatgagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctctgagacctgtcgtgggtgcactgtggatgcatgggtaataaatataggatgagat 504

                                                                       
Query: 305 tcaaaagtccagctcccagaggatggggacggatgggtgctatacaaagcctgggcagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaaaagtccagctcccagaggatggggacggatgggtgctatacaaagcctgggcagga 564

                                                     
Query: 365 gactcaagcttgcttgttattaaagaggagcaaagtcaatca 406
           |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 gactcaagcttgcttgttattaaagatgagcaaagtcaatca 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no394_a04.g1 MSMg01no394_a04.g1 CHROMAT_FILE:
MSMg01no394_a04.g1 PHD_FILE: MSMg01no394_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:14 2005
         (343 letters)



>mm_chr19_59180547_59181289
          Length = 743

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ttgggtagcatctagcctggggagtagagttttagaaagctgagcatgctaagaactgtg 63
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 543 ttgggtagcatctagcctggggagtagagttttagaaagccgagcatgctaagaactgtg 484

                                                                       
Query: 64  gattgtgtttgttaaaatggaccaaaggactaggcaaaggagaacagggacgtgtacgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gattgtgtttgttaaaatggaccaaaggactaggcaaaggagaacagggacgtgtacgtg 424

                                                                       
Query: 124 atatcaggacacaggcagacacattcatgggtgcattggttcttaggaggaaaaactgat 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 423 atatcaggacacaggcagacacattcataggtgcattggttcttaggaggaaaaactgat 364

                                                                       
Query: 184 ttttgaaaaaaaattgtggaaattgattttcttaaagctctcaacatttgtaattcctat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttttgaaaaaaaattgtggaaattgattttcttaaagctctcaacatttgtaattcctat 304

                                                                       
Query: 244 ggtgtgtcttttaagtaccctcaaagatagtgagtcttggattggttatcaatggtgtac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggtgtgtcttttaagtaccctcaaagatagtgagtcttggattggttatcaatggtgtac 244

                                                   
Query: 304 tgattatttagtaattaaacattaatctaaatatattggc 343
           |||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 tgattatttagtaattaaacatcaatctaaatatattggc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)