BAC Information

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BAC

Clone NameMSMg01-394E04
Chromosome19 (Build37)
Map Location 3,447,444 - 3,447,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal
Downstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394E04.T7 (MSMg01no394_e04.b1)MSMg01-394E04.TJ (MSMg01no394_e04.g1)
ACCAG495359AG495360
length758751
length of high quality
(start - end)
249 (76 - 324)507 (83 - 589)
definitionCHROMAT_FILE: MSMg01no394_e04.b1 PHD_FILE: MSMg01no394_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:35 2005CHROMAT_FILE: MSMg01no394_e04.g1 PHD_FILE: MSMg01no394_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAAT
CCGCGGAATTCAATTCCTTCCCCCCAGTCAGGAAGCCCATTATACCTAGT
GCTCAAGCTTCAGGGGACTCAGCGCCCTCTTCTGGCCTCCTCAGATACCT
GCATGCACTGGGACACACACACACACACACACACACACACACACCCCTGT
CTGTTACCTGGATGCCCTCAGGAAGCCATCATCAGCGCCCTCTTCTGCCC
TCCTCAGATACCTGCATGCGCTGGGACACTCACACACACACACACACCCC
TGTCTGTTACCTGGATGCCCTCAGTAATCCATCAGTTCCAGAAACTTCCA
AACCATGATCCACAATCTTCCTGAAGACCCATCATAGAGGATGAAACCGT
GAACTGAACTTTTCAGGGAGAACAAAAGGCCACTCCTCTGCTGAAGGTGT
CACAGAGCTCATCAACTGCTCATGATTTCTGCGACTGGAGCTGGATAGAT
TGCGTCACGGCTAAGGCCACTTGCTGTTCCTCGCGTTGACCTGATCTAGT
TTCTTAGCACCCACCTTGGTGGTTCACAGCTGTTCGCCTAATACTCCTTT
AATAACACACCGCTCGCTATTCCTTCTCACTCCATGCCTATGCCTGCAAC
TCCCATTGCCCGTCCCCCTCCCCCATATTCTCCACTACACTCTTTCCCTT
TCCCCCCACCAACTCTAACTCCAATCCTCTCTCCACTTTTTTTCCTCCTA
AATCTATC
TTTCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGATTACAACATCGGA
AAAGAAAGACTTTTGAAGATAACCTAAGACCAAAGAGGACTGCAACTGGA
TAAAATACGCACAATGGGAGGAAAGCCTGAAGGAACTTCAAAGGGCTCAA
TCCACATATGAGCGCGCTTTAGATGTGGACTACCAAATTGTTACACTCTG
GCTGAAATCTGCAGAAATAGAGATGAAGAATCGCCATGTGAAGCATGCCT
GGAACATCAAGGACGGTGCCATAACAACTCTGCTACGAGGCGACCAGTTC
TGATACAAGTACGCATGCATGGAGGAGATATTGGGCAACGTTGCTGGTGC
TCGGCAGGTGTTTGGGCGCTGGATGAAATGGCAGCCTGAGGAGCAGGCCT
GGAACACTTACATCAACTTGGAGCTGAGATACAAAGTGGTGGATTGGGTC
CACACCATTTATAAACGCTTTGTGCTCGTGGACCCTGCTATAAAGAACTG
ATTCAAGTATTCTCGGTTTGAAGAGAAACATACTTCGTTTGCTCCTTCTC
GGACAGCCTATGAGAGAGCAGTGGAGGTTTTCTCCCATCCCCCCCCAGGT
TCCCTCCCCTTACGCGGCCCCTGGTAATCTTGATCCGACATCCCACCCAC
TCTTCTTAAATCTCCGCCATCTTCGAATTTTCTCTGGATCGAACTTTTCA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_e04.b1 MSMg01no394_e04.b1 CHROMAT_FILE:
MSMg01no394_e04.b1 PHD_FILE: MSMg01no394_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:35 2005
         (249 letters)



>mm_chr19_3447121_3447765
          Length = 645

 Score =  379 bits (196), Expect = e-110
 Identities = 240/270 (88%), Gaps = 26/270 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcaggaagcccattatacctagtgctcaagcttcaggggactcagcgccctcttctgg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agtcaggaagctcattatacctagtgctcaagcttcaggggactcagcgccctcttctgg 529

                                                                       
Query: 61  cctcctcagatacctgcatgcactgggacacacacacacacacacacacacacacacac- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 528 cctcctcagatacctgcatgcactgggacacacacacacacacacacacacacacacaca 469

                                                                       
Query: 120 --------------------ccctgtctgttacctggatgccctcaggaagccatcatca 159
                               | | ||||||||||||||||||||||||||||||||||||
Sbjct: 468 cacacacacacacacacacacac-gtctgttacctggatgccctcaggaagccatcatca 410

                                                                       
Query: 160 gcgccctcttctgccctcctcagatacctgcatgcgctgggacactcacacacacacaca 219
           ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 gcgccctcttctggcctcctcagatacctgcatgcactgggacactcacacacacacaca 350

                                         
Query: 220 cacccctgtctgttacctggatgccctcag 249
               ||||||||||||||||||||||||||
Sbjct: 349 ----cctgtctgttacctggatgccctcag 324



 Score =  153 bits (79), Expect = 1e-41
 Identities = 98/113 (86%), Gaps = 14/113 (12%)
 Strand = Plus / Minus

                                                                       
Query: 44  tcagcgccctcttctggcctcctcagatacctgcatgcactgggacacacacacacacac 103
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 412 tcagcgccctcttctggcctcctcagatacctgcatgcactgggacactcacacacacac 353

                                                                
Query: 104 acacacacacacacacccctgtctgttacctggatgccctcaggaagccatca 156
           ||||              |||||||||||||||||||||||||||||||||||
Sbjct: 352 acac--------------ctgtctgttacctggatgccctcaggaagccatca 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 645
Length adjustment: 9
Effective length of query: 240
Effective length of database: 636
Effective search space:   152640
Effective search space used:   152640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)