BAC Information

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BAC

Clone NameMSMg01-394H05
Chromosome19 (Build37)
Map Location 49,424,107 - 49,581,095
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394H05.T7 (MSMg01no394_h05.b1)MSMg01-394H05.TJ (MSMg01no394_h05.g1)
ACCAG495504AG495505
length806782
length of high quality
(start - end)		428 (50 - 477)423 (82 - 504)
definitionCHROMAT_FILE: MSMg01no394_h05.b1 PHD_FILE: MSMg01no394_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:50 2005CHROMAT_FILE: MSMg01no394_h05.g1 PHD_FILE: MSMg01no394_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,580,674 - 49,581,095)(49,424,107 - 49,424,529)
sequence
NCCCCCCTCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCCAGGCTTTCTGTCCTGTGAGCTTCAGGAAGATTCTCTCA
TTTTTCTGTGTGGGTGCTGGGGTTATAGGAACATGCCATCACATCTTGCC
TTTTTTTGCATGGTTGCAGGGACTGACCTTGAGCTGTCAGACTTAGCATG
AGCTGTTCCCACCTAAGCTATCTTCTCCACTTGAACCAGAAGTCTTAGAA
TAAAAAATTCTTAACAATGTATTGTAAAGATGACTCAGTGATTAAGAGCA
TGCTCTGCTGTTGCATGGGACCTGAGTTCTATCCCCAACACTCTCATAGG
GTGTTGCACAGCCATCTGTAACTCCGGTTACAGAGGAATCTGACAAAGCT
GCCACCTCTGGTCACATGCACAGACCGGTCCTGCACCTCGCATATACAAT
TTAAAAATTAGTATGTTTTAAATTAATCAACCCTTGTCCTGTGCTTATTC
TTTACATTGTACCCTGTGTGGCTTGCCCAATTGGAAACGTTTTTTTGACG
CATAAAGCCTAGTATTTTCTCCTAATGCCTAGTTCCTTTAAAAATACCAG
GAAATCCTGACATCCGAATGGTTCCTGGATGAACGCTTTCCCCTCGATTT
CCAAAACTCCCACCTCAACCGTAAAACTCCCTCCTTGGGCTCTAAAAGTC
CCTCCCTCTCCTCCCCGTAACGGGTCATTTCCTCTATCCCTCTACATTTC
CCGTGTTTTTTATTAACCACTTACTACCCCCGTCCACAATTATTCACCCT
CCCTCC

NNNNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAATTAAGTATCAGGA
ATACAGGCACTATCTTGAAGAGAAATACCTCACAGTGAAAACTGTCACAG
TGACTGCTATAGCTGATATGTTAGATATACTGAGAATCCAATTGATTTGT
CCTCGTTTTCTCTATCAAATTAACTATATCTTCTCACTATCTAGAGGTGA
ATCGAGGATCAACTCAGCCAGAGTAGCTAGGAAGAGGAGTTACTGTGTGG
TAATTAACCACCCTCACACACATGGACCTACATGATTTAATTTTCAGACA
AGATTGGCTAGGAGACTATACACTCTCTTTTTACCAGACAGTATCAAACC
CAGGGTCTTACAACTTAACATTACTGTGTGCCCAACCCCGGCTGTTTCTA
CGTTCTTTTTTTCTAANATTTTTAATTAGATATTTTCTTCATTTACATTT
CAAATGTTATCCCAAAAGTTACCTATACTCTCCCCCCGNCCTGTTCCCCT
TACCACCCACTTGCATTTCTTGGCCCCTGGATCCCCTTGAACTGGGGCCA
TATAAAGTTTGTAAGACCAAGGGTGCCTCTTTTTCCCTTGATGGGCGAAA
TATGGCCCTTAGAAATCCAGCTCCCGGTAAATGGGCTAACCCTAATTGCT
GTTCCTCCCCTAGCGTTAGGAACACCCCTCTTCCTCCCTGATAAACATTC
CTCACTTCCACCCCCGGGGTTTTTCGGCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_h05.b1 MSMg01no394_h05.b1 CHROMAT_FILE:
MSMg01no394_h05.b1 PHD_FILE: MSMg01no394_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:50 2005
         (428 letters)



>mm_chr19_49580673_49581500
          Length = 828

 Score =  793 bits (410), Expect = 0.0
 Identities = 419/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccaggctttctgtcctgtgagcttcaggaagattctctcatttttctgtgtgggt 66
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattccaggctagctgtcctgtgagcttcaggaagattctctcatttttctgtgtgggt 364

                                                                       
Query: 67  gctggggttataggaacatgccatcacatcttgcctttttttgcatggttgcagggactg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gctggggttataggaacatgccatcacatcttgcctttttttgcatggttgcagggactg 304

                                                                       
Query: 127 accttgagctgtcagacttagcatgagctgttcccacctaagctatcttctccacttgaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 accttgagctgtcagacttagcatgagctgttcccacctaagctatcttctccacttgaa 244

                                                                       
Query: 187 ccagaagtcttagaataaaaaattcttaacaatgtattgtaaagatgactcagtgattaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccagaagtcttagaataaaaaattcttaacaatgtattgtaaagatgactcagtgattaa 184

                                                                       
Query: 247 gagcatgctctgctgttgcatgggacctgagttctatccccaacactctcatagggtgtt 306
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 183 gagcatgctctgctgttgcatgggacctgagttcaatccccaacactctcatagggtgtt 124

                                                                       
Query: 307 gcacagccatctgtaactccggttacagaggaatctgacaaagctgccacctctggtcac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcacagccatctgtaactccggttacagaggaatctgacaaagctgccacctctggtcac 64

                                                                       
Query: 367 atgcacagaccggtcctgcacctcgcatatacaatttaaaaattagtatgttttaaatta 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  atgcacagaccggtcctgcacctcgcatatacaatttaaaaattagtatgttttaaatta 4

             
Query: 427 at 428
           ||
Sbjct: 3   at 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_h05.g1 MSMg01no394_h05.g1 CHROMAT_FILE:
MSMg01no394_h05.g1 PHD_FILE: MSMg01no394_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:50 2005
         (423 letters)



>mm_chr19_49423907_49424729
          Length = 823

 Score =  758 bits (392), Expect = 0.0
 Identities = 415/423 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaattaagtatcaggaatacaggcactatcttgaagagaaatacctcacagtgaaaa 60
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttaaaattaaatatcaggaatacaggcactatcttgaacagaaatacctcacagtgaaaa 260

                                                                       
Query: 61  ctgtcacagtgactgctatagctgatatgttagatatactgagaatccaattgatttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcacagtgactgctatagctgatatgttagatatactgagaatccaattgatttgtc 320

                                                                       
Query: 121 ctcgttttctctatcaaattaactatatcttctcactatctagaggtgaatcgaggatca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcgttttctctatcaaattaagtatatcttctcactatctagaggtgaatcgaggatca 380

                                                                       
Query: 181 actcagccagagtagctaggaagaggagttactgtgtggtaattaaccaccctcacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcagccagagtagctaggaagaggagttactgtgtggtaattaaccaccctcacacac 440

                                                                       
Query: 241 atggacctacatgatttaattttcagacaagattggctaggagactatacactctctttt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggacctaaatgatttaattttcagacaagattggctaggagactatacactctctttt 500

                                                                       
Query: 301 taccagacagtatcaaacccagggtcttacaacttaacattactgtgtgcccaaccccgg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 taccagacagtatcaaacccagggtcttacaacttaacattactgtgtgcccaaccccag 560

                                                                       
Query: 361 ctgtttctacgttctttttttctaanatttttaattagatattttcttcatttacatttc 420
           ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtttctatgttctttttttctaaaaattttaattagatattttcttcatttacatttc 620

              
Query: 421 aaa 423
           |||
Sbjct: 621 aaa 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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