BAC Information

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BAC

Clone NameMSMg01-394K06
Chromosome19 (Build37)
Map Location 12,942,939 - 12,943,259
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444
Downstream geneOlfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394K06.T7 (MSMg01no394_k06.b1)MSMg01-394K06.TJ (MSMg01no394_k06.g1)
ACCAG495649AG495650
length7941,492
length of high quality
(start - end)
356 (51 - 406)---
definitionCHROMAT_FILE: MSMg01no394_k06.b1 PHD_FILE: MSMg01no394_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:05 2005CHROMAT_FILE: MSMg01no394_k06.g1 PHD_FILE: MSMg01no394_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAATCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGA
TCCGCGGAATTCATGTTTATTTCCATATGTACATGCATTTATGTGGTTAT
ATCTCTATCTCTATCATCTATATCTAATCTACATCTATATATATATCTAT
ATTAATATAATATAATATTAATGAGTACATATTTTAAAATGTTCCCTTTG
TGTGTGAACTCTGTGTAGGAAATGGAAAACAAAAGCCTGAGAATTTCTTG
ACAACTTGCAACTAGAATTTCAGTCACAGACTCTCCAGATCCACACAACC
TGCTTACAAAACTTTTATAAATAATATTATTTACACAATTATCATAATTA
GAAAATTATTTTTTCTTTCATTTAAACTCTTCTGTAAAGTAGGGAAAAGC
CTCGAACATATGGGTACAGCGGAAAAATTCCTGAATAGAACAGCAATGGC
TTGTGCTGTAAGATTGAGAATCCATAAATGTTACCTCATAAAATTGCAAA
GTTTCTGTCAGGCCACAGACACCGTCTATATCACATAAAGCTCCTCACCC
TAGTGGGCAAGGATTCTTACCTACTCTAAACCATATAGGGGTATTACCAT
TCCTTCTCCTATTTCTTAAATTCCTCACTCTGCTCTCCCTTCCATTCCCA
TCTACCTCTCCTTTCAAACTTCCGTTTTCCACATCTCACCTTCCCAATTC
TTCCCCTCCTCCTATCTTCTCCCTGTTCCTCAACATCCTCCTATAACATC
CCTTTCCTTTCCCCCTCCTTTTTTTCCCCTCAACTATCTTTCCN
TCATCCGGATATATCCCTCCCAGTTGCGACTGTCATAGAGGAGAGACGAA
CAGGTCATCTCCTCAACGACGCGCACGTACGTATACCGGCGTTCATATAG
CTTCGCGCGTAGTCGAAGAGACGTCCGCAAGGAGTGCGGTCCGCCAAGTG
GTTGGTTCATTACGTAGAGGAGAGTGAGGAGGGTGACAAGAACGACTACT
GAAANTAGTATCANTGGTGCTGCGAGAGCCCGCGAGAACACGACGCGACG
ATGATATATACACGACGGATCACACGCGATGAGTGAGTGGCGGGTAGATC
GAGTACGCGGTATCAAGGAACTGTCACTACACTGCTCGATGCTCCCTTTC
ACGCTATCTACCATAGCCACTTTATTGACCAGCTCTCAGTCTGTGGTCTA
CGGCGTTCGTGATGCAGCGGCGTTGCATGTCAGCGTTCTGTCCGTGTATA
CGCCGTCTATCTCCGGCCGCGGCGGTGTCCACCATATGTCTCGTGCGTAT
CTGATGTCGCGGTTATTCGCGCTCTACTTCACCTTACGATTACTCTCGAC
TGTCCTNGCCGTTCCGTCTCGATTCCACCTTACTTCACTCAACTTACTCG
TACTTCGCATTGCCTCGTTACTCTGCTTTACTTCACGCACACCATTTCCT
ATACACAGACTCACTCGACGTTGGCGGTGTAGAGCGTCTTACGTCGAGAT
AATGAGTTGCACAATACCGTAGTTATTGTCCCCGCCGCAGCTGCCACAGA
AACGTAGTAGTTACCGTATACCGTGGATCCGGGCGCCACACGTCTCGTAT
CACGACGCGCTCNGCGTGATATATTGCGGTGTGGAGCGATCGTATCGCAC
ATTGCGATCGCGCGTACTTAGGACACATCAAGAGCCGCGTTGCTTGTTAT
CGACGTCGACATATTAACGACTATCGTGCGCGTCTACTCTGTGCGCACAT
GAGTCCATATGTGCCGGTCGCGCGACGCGTATGTTCTACGACATGACTGT
ATCGGCTACACCGATCGCGATATTCGCGGATACGATNGACGTGTATACAG
CCGCGGCCTACGCGCGTACGCGGCGNCGCACATATAACTACCGATACACG
CCGCGTGATCGCGCGCGTATGTCGCGCGTATAACGCTGCTATGCGACGTA
GACTGACAGATATGCGAGTGTGGGATTTNCGTCGCAGGAAAAGTGCGTGT
ACACAACGCGACGCGCACGATCGTTGTTGCGACCGCGACTCGCGAAGCTC
TATTATGACGCGATATCCCGACTCGTNATATACGTCGGCGACGCGCGCGC
GCGCGACTATTATGAACGCGGTACTTATACTCAGCGGCGATGTACGGAAC
GTATCNCGTAGAACCTCACGGAGGNCGTCNATAGAACNAACTGATGCATC
GAGCACGCCGTTATGACTCACGCGGCCGTGATNTCATATGATACGACGGC
TACACTACGTCCGTGATACGTCAGANTNTAGTGTGCGACGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_k06.b1 MSMg01no394_k06.b1 CHROMAT_FILE:
MSMg01no394_k06.b1 PHD_FILE: MSMg01no394_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:05 2005
         (356 letters)



>mm_chr19_12942718_12943474
          Length = 757

 Score =  408 bits (211), Expect = e-118
 Identities = 280/321 (87%), Gaps = 33/321 (10%)
 Strand = Plus / Plus

                                                                       
Query: 50  tatctctatctctatcatctatatctaatctacatcta----tatatatatctatat--- 102
           ||||||||||||||||||||||||||||||||||||||    |||||||||||||||   
Sbjct: 222 tatctctatctctatcatctatatctaatctacatctacatctatatatatctatataat 281

                                                                       
Query: 103 -taatataatataatat----taat----------------gagtacatattttaaaatg 141
            ||||||||||||||||    ||||                |||||||||||||||| ||
Sbjct: 282 ataatataatataatataatataatataatataatataaatgagtacatattttaaagtg 341

                                                                       
Query: 142 ttccctttgtgtgtgaactctgtgtaggaaatggaaaa-caaaagcctgagaatttcttg 200
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 342 ttccctttgtgtgtgaactctgtgtaggaaatggaaaaacaaaagcctgagaatttcttg 401

                                                                       
Query: 201 acaacttgcaactagaatttcagtcacagactctccagatccacacaacctgcttacaaa 260
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402 acaacttgcaactagaatttcagtcatagactctccagatccacacaacctgcttacaaa 461

                                                                       
Query: 261 acttttataaataatattatttacacaattatcataattagaaa----attattttttct 316
           ||||||||||||||||||| | | ||||||||||||||||||||    ||| ||||||||
Sbjct: 462 acttttataaataatattaatgatacaattatcataattagaaagaaaattcttttttct 521

                                
Query: 317 ttcatttaaactcttctgtaa 337
           |||||||||| | ||||||||
Sbjct: 522 ttcatttaaatttttctgtaa 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 757
Length adjustment: 9
Effective length of query: 347
Effective length of database: 748
Effective search space:   259556
Effective search space used:   259556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)