Query= MSMg01no394_o13.b1 MSMg01no394_o13.b1 CHROMAT_FILE:
MSMg01no394_o13.b1 PHD_FILE: MSMg01no394_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:28 2005
(417 letters)
>mm_chr19_53094286_53095103
Length = 818
Score = 721 bits (373), Expect = 0.0
Identities = 407/419 (97%), Gaps = 3/419 (0%)
Strand = Plus / Plus
Query: 1 gctgaaatgtaacagtcaggagtcgcagagaacagagcctttctatggctgaggaggccg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gctgaaatgtaacagtcaggagtcgcagagaacagagcctttctattgctgaggaggccg 260
Query: 61 ctgagcaggtcacacacaaggcagcccttcctccctgtccccagaggcctggcaaagaca 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctgagcaggtcacacacaaagcagcccttcctccctgtccccagaggcctggcaaggaca 320
Query: 121 cagagccccacttaatggagttaccccaacaatgcagtgcctctccacaggaactgaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagccccacttaatggagttaccccaacaatgcagtgcctctccacaggaactgaaag 380
Query: 181 aggaaatgcacttctgctggtgccgtcctcatcacccctggaccacacctgctgagtctt 240
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aggaaatgcacttctgctggtgcagtcctcatcacccctggaccacacccgctgagtctt 440
Query: 241 ctctgccttct--gtttcacacttagggcacggatgctcaatttcagaacctctcaccca 298
|||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ctctgcctgcacagtt-cacacttagggcaccgatgctcaatttcagaacctctcaccca 499
Query: 299 gattcggggatcccctggtttctctgtcctccctcctccgatccacactcaagagcgccc 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 gattcggggatcccctggtttctctgttctccctcctccgatccacactcaagagcgccc 559
Query: 359 ctactggtcatactgccttcttgttcctgctaaccagacctcatctcagccagacaggg 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctactggtcatactgccttcttgttcctgctaaccagacctcatctcagccagacaggg 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space: 330072
Effective search space used: 330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_o13.g1 MSMg01no394_o13.g1 CHROMAT_FILE:
MSMg01no394_o13.g1 PHD_FILE: MSMg01no394_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:28 2005
(463 letters)
>mm_chr19_53290313_53291175
Length = 863
Score = 774 bits (400), Expect = 0.0
Identities = 400/400 (100%)
Strand = Plus / Minus
Query: 64 tcgggactggagagatggctcagtggttgagaacactggctgcgcttgtagaggagctgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tcgggactggagagatggctcagtggttgagaacactggctgcgcttgtagaggagctgg 804
Query: 124 gctcaattcttagaacccacacagaggttctcaactgtctgttacttcggtcccagagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gctcaattcttagaacccacacagaggttctcaactgtctgttacttcggtcccagagga 744
Query: 184 gcctctttggcctctgtaccaggcacagatgtggtgcatacatgcaggcaaaacacccat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gcctctttggcctctgtaccaggcacagatgtggtgcatacatgcaggcaaaacacccat 684
Query: 244 atacataaaattaaagtaaaatctaaaaaaaaagaagaagaaatgaaaaagcagcatcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atacataaaattaaagtaaaatctaaaaaaaaagaagaagaaatgaaaaagcagcatcat 624
Query: 304 ggagaaaggtcgcttgatggagcccaagggttggagagaattgccctagtgcactcgtgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggagaaaggtcgcttgatggagcccaagggttggagagaattgccctagtgcactcgtgg 564
Query: 364 ccctgggcgtgactccctcccagctcttagaaaatttaagaaggcagcttctccaaacat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccctgggcgtgactccctcccagctcttagaaaatttaagaaggcagcttctccaaacat 504
Query: 424 attagaaaagttttttatgtagaaaaacattttttaacaa 463
||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attagaaaagttttttatgtagaaaaacattttttaacaa 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
