BAC Information

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BAC

Clone NameMSMg01-395I05
Chromosome19 (Build37)
Map Location 17,180,248 - 17,180,618
singlet/doubletsinglet
Overlap geneA230083H22Rik
Upstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395I05.T7 (MSMg01no395_i05.b1)MSMg01-395I05.TJ (MSMg01no395_i05.g1)
ACCAG496313AG496314
length784773
length of high quality
(start - end)
375 (46 - 420)386 (72 - 457)
definitionCHROMAT_FILE: MSMg01no395_i05.b1 PHD_FILE: MSMg01no395_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:23 2005CHROMAT_FILE: MSMg01no395_i05.g1 PHD_FILE: MSMg01no395_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCGAGAGGAGCCGCG
GAATTCTTAATATACTTTTATTTATTTGGGGGGGGCAGGGATGTGTGCCA
TGGGGTATCTGTGGAGGTCAGAAGTCAGAGGACAACATCATGTGGGTCCC
AGGTCATCAGGCTTGGTAAGAAGACCCTTAACCCACCAAGTCATTTCACC
AGCCCTGCAAGAGATTTTATATCCAAGAAATATCAAATTTTATATTAAAA
TGTTATTCAATTTTATACCATATAGAAATTGGGTCACACTTGCCTGTTTT
GAGGATTTTCTGTGTGTTACTATTTATTTTTTGATTTTTTACAATAGTGT
ATTATTCATTTGTTTTACTGGTGCATAACTTATTGACAATTTCTCTGCTG
TTGGCCATACTGATTTTCTTCTCCACTATTAGTGTTTAAGGTAATAAGTC
CATGAATATTTTTGTCCATGAACATTGGATGCACGTAAAGTCTTTCTTTA
TGCTCCTTTGCTAACATACACATGCGAACACCCATTTGGGAATATTTATC
CATGACAGAATAAAAGAGATTGACTTTTTTTTCCTCACTTCACTTGTTTC
TCGGTTTATTTATGTTTCTCTTCTCCCCATGGCCTTCGTAACTGTTTGGC
GGGGAAACCCATTTCTATTTCGTGTGACAAAAACCCCCTTATTTTGCGAC
ACTCGTCTCTCTTTCTTCCGCCTTTTTCGTCCGCCCCGCATTTTTTCCCT
TTTTCTTTATCTCCGCCGCGATTTTTCTTTCCCN
NNTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTTCGCAAAATTCCTGATCTTTCCAGAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACAAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTTAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATTTTTGTTTTTATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGCCGCCCAGAGTACCTTCTACTTCTATCTTGTGAA
AAAGCTTGTGTAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGCCTGGTTCTGGGCTTTTTTTGGCTGTGAGACTATT
TATAACTGCTTCCACTTCTTTACGTTACATGGTACTGCCTATAAGGTTCA
ACCTTGATTCCGCATCCTATTTTGGTATCCGGTTATCCGCCCAGAAATTT
GCCCATTTTCCTTTTTCCCCTTCCGGTTTTGCGAAACACATTTTTCTTCT
TTATCCATCTCTCTCCCTGTCCTTTTCCCCCCCTTTTTTCCCATTTTTTT
CACTTCTCGCTTTCCCCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_i05.b1 MSMg01no395_i05.b1 CHROMAT_FILE:
MSMg01no395_i05.b1 PHD_FILE: MSMg01no395_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:23 2005
         (375 letters)



>mm_chr19_17180044_17180818
          Length = 775

 Score =  603 bits (312), Expect = e-177
 Identities = 357/374 (95%), Gaps = 7/374 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttaa-tatacttttatttatttggggggggcagggatgtgtgccatggggtatc 64
           |||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcttaattaaatttttatttattgggggggggcagggatgtgtgccatggggtgtc 264

                                                                       
Query: 65  tgtggaggtcagaagtcagaggacaacatcatgtgggtcccaggtcatcaggcttggtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tgtggaggtcagaagtcagaggacaacatcatgtgggtcccaggtcatcagacttggtaa 324

                                                                       
Query: 125 gaagacccttaacccaccaagtcatttcaccagccctgcaagagattttatatccaagaa 184
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 gaagacccttagcccaccaagtcatttcaccagccctgcaagagattttatatcaaagaa 384

                                                                       
Query: 185 atatcaaattttatattaaaatgttattcaattttataccatatagaaattgggtcacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatcaaattttatattaaaatgttattcaattttataccatatagaaattgggtcacac 444

                                                                       
Query: 245 ttgcctgttttgaggattttctgtgtgttactattta-t--tttttgattttttacaata 301
           |||||||||||||||||||||||||||||||||   | |  |||||||||||||||||||
Sbjct: 445 ttgcctgttttgaggattttctgtgtgttacta---actgctttttgattttttacaata 501

                                                                       
Query: 302 gtgtattattcatttgttttactggtgcataacttattgacaatttctctgctgttggcc 361
           ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct: 502 gtgtattattcatttgtttaactggtgcataacttattgacaatttctcagttgttggcc 561

                         
Query: 362 atactgattttctt 375
           ||||||||||||||
Sbjct: 562 atactgattttctt 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)