Query= MSMg01no395_j03.b1 MSMg01no395_j03.b1 CHROMAT_FILE:
MSMg01no395_j03.b1 PHD_FILE: MSMg01no395_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:27 2005
(269 letters)
>mm_chr19_23731900_23732572
Length = 673
Score = 439 bits (227), Expect = e-128
Identities = 245/253 (96%), Gaps = 4/253 (1%)
Strand = Plus / Plus
Query: 20 cgccagtgatttctagataaagtccatttactgcagtgactgagcaagtacttttttgat 79
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 220 cgccagtgatttctagataaagtccatttacggcagcgactgagcaagtacttttttgat 279
Query: 80 aacgaaggccagagagctgagtcattcaaactccttaggcc----aatcaggtatctttg 135
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 280 aacgaagggcagagagctgagtcattcaaactccttaggccccctaatcaggtatctttg 339
Query: 136 gactcttgtaacttggtatgcagctttaaattccagggatacctctggtgtaaacatctg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gactcttgtaacttggtatgcagctttaaattccagggatacctctggtgtaaacatctg 399
Query: 196 agactcccgggcctgatttcttcaggacatttccctattccagccactgactgttgaagc 255
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 400 agactcccgggcctgatttcttcaggacatttccctattccagcctctgactgttgaagc 459
Query: 256 agagaggagccta 268
|||||||||||||
Sbjct: 460 agagaggagccta 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 673
Length adjustment: 9
Effective length of query: 260
Effective length of database: 664
Effective search space: 172640
Effective search space used: 172640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no395_j03.g1 MSMg01no395_j03.g1 CHROMAT_FILE:
MSMg01no395_j03.g1 PHD_FILE: MSMg01no395_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:27 2005
(245 letters)
>mm_chr19_23938480_23939124
Length = 645
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 ttcagttcagcagtacgggagtgtcatttctatttgggggtagtgtgggtaccttttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcagttcagcagtacgggagtgtcatttctatttgggggtagtgtgggtaccttttgtc 385
Query: 61 ctagattctatttgatcattatgaaaatcattgtttggcctttcagacaaatccccaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctagattctatttgatcattatgaaaatcattgtttggcctttcagacaaatccccaaga 325
Query: 121 cttagaaaaactgtaacctttctgaccagctcattcattcactctgctgtgacataactg 180
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 cttagaaaaagtgtaacctttctgaccagctcattcatttactctgctgtgacataactg 265
Query: 181 gccagctcatgctgcaggcttcctttcctggccacagttctattccttgaggaattgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccagctcatgctgcaggcttcctttcctggccacagttctattccttgaggaattgctc 205
Query: 241 tatg 244
||||
Sbjct: 204 tatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
