BAC Information

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BAC

Clone NameMSMg01-395L03
Chromosome19 (Build37)
Map Location 4,254,963 - 4,255,294
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4
Downstream geneSsh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395L03.T7 (MSMg01no395_l03.b1)MSMg01-395L03.TJ (MSMg01no395_l03.g1)
ACCAG496451AG496452
length770773
length of high quality
(start - end)		336 (48 - 383)404 (79 - 482)
definitionCHROMAT_FILE: MSMg01no395_l03.b1 PHD_FILE: MSMg01no395_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:37 2005CHROMAT_FILE: MSMg01no395_l03.g1 PHD_FILE: MSMg01no395_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTCCCTTTCATTTTTGACCTATATGTTTTATGCTTCCTAATA
CATTTCATTAGGAAACCCACGGGAAGCACCCTCATTTTCTAGGCATATTG
AGAGTTGGGAGTGGTCTCTCCTGCACTGGAATCTCCAGAGCACAGTGACC
TAGACCTCGAATGCTACATGAATTTTTACTTAAGTGTTTGGACTCATGAT
CACGTCTCTGTCAGATACTATGTTTTCTGGGAGCAAAGGCTGTATTATAT
ACATCATCACATTCCTCAGAGTACTTACACAGTACCACATACATAATAGG
TGTTTAAAGTGCTGGGGTGGGGGTAGGGGGAGGTTTCTTCTTTCTCCCTT
TCTTCTCCCCTTTTTTTCCCCCCCCCCCCCCTTTTCTGCTTTTTCTCTTC
CCCCTTTCTTTTTTTTTCCCCCCCCCCCCCCTTTTTTTCCCCCTTTCCTC
CCCCTCTCCCCTTTCCCCCTCTTTTTTTTCTCCTCCTCTTCCTCCTTTTT
CTTTTCGGCTCCCTTTTCCTCTCCCCCTTTACCCTTTTTTTTTCTTTTTT
CTCGCCCCTCTTTTTCTTTCTCTTTTTCTTTTTCTCCCCCCCCCCCTTTT
TCCCTTTTTTTTTTTGTTTTTCTTTCCCTTGTTCCTCGTTTTTCCTTTTT
TCCCCCCTCCTCTTTTTTTTTTTTTCTTCCTTCTTTTCCCCCCGCTTTTC
CTTCTCTCTTTTTTCTTCCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGGGATATGTAG
AAAGACTGTCTCAAAAATAAAATAAAAAATAAAAAAAAAGGAGGAGGAGG
AGGAGGAGGAGAAAGGAAGAAAGAGGCTGGGTGTAGTGATGTACAACTTT
AATCTCAGCACCCAGGAAGCAGAGGCAGTCCAATCTCTGGGAATCTGGGA
AATCTAGGCCAGCCTGGAAGGAAAAAAAAAAAAAGGAAGAGAGGAGAGAA
AGAAAAAAGAAAATTAAATTATTTACACATTCCTGTGTCCTCGAGACACT
GTCTTAGGCCTTGAGCCCTCTGTAGTTGAGGACGATCTTGGATTTCTGAT
ATTCCTGCCTCTGCTTCCCAAGTCCTGCAATTACAGGTGCCGTGCATCTA
ATCCAGGGCTTCGGGCATGCTAAGCAAGCACTCTACTCAACTGAGCTACA
GGTACAGGAGATTTTAAATGAGAACCTGTACTGGGTACACTGATAGAGCA
AAGAGTTTCCCACTGAAGGTCCGAACTCCCAGTGATTCTCCACAATTCTC
TTCTCTGCCGTGGTACCCAGAGTTGACCCCTTTCCGCTAGGGAGTGTCCC
TTCTCGCTGTGGGTTTGAACAAACAACCTCGTTACAGGATAGGTGCCGTG
GCACATTCCTTCGTACAATTGACCGGGGCCCTCCTTCTCTTCCTTCTTGC
TTTCTTTGACCTTTCGTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_l03.b1 MSMg01no395_l03.b1 CHROMAT_FILE:
MSMg01no395_l03.b1 PHD_FILE: MSMg01no395_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:37 2005
         (336 letters)



>mm_chr19_4254759_4255494
          Length = 736

 Score =  603 bits (312), Expect = e-177
 Identities = 327/332 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttccctttcatttttgacctatatgttttatgcttcctaatacatttcattag 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccccctaatttttgacctatatgttttatgcttcctaatacatttcattag 264

                                                                       
Query: 65  gaaacccacgggaagcaccctcattttctaggcatattgagagttgggagtggtctctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaacccacgggaagcaccctcattttctaggcatattgagagttgggagtggtctctcc 324

                                                                       
Query: 125 tgcactggaatctccagagcacagtgacctagacctcgaatgctacatgaatttttactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcactggaatctccagagcacagtgacctagacctcgaatgctacatgaatttttactt 384

                                                                       
Query: 185 aagtgtttggactcatgatcacgtctctgtcagatactatgttttctgggagcaaaggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtgtttggactcatgatcacgtctctgtcagatactatgttttctgggagcaaaggct 444

                                                                       
Query: 245 gtattatatacatcatcacattcctcagagtacttacacagtaccacatacataataggt 304
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 445 gtattatatacatcatcacattcctcagagtacccacacagtaccacatacataataggt 504

                                           
Query: 305 gtttaaagtgctggggtgggggtagggggagg 336
           ||||||||||||||||||||||||||||||||
Sbjct: 505 gtttaaagtgctggggtgggggtagggggagg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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